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What would be really helpful is to make this tool to comply with all
other Phenix tools that use Phenix atom selection syntax. It is
confusing if different tools within the same software package use
different languages to refer to atoms.<br>
<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 11/8/17 11:34, Ursula Schulze-Gahmen
wrote:<br>
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cite="mid:CA+erM+20UjZjBjkPG0=_RGLcxcvcz6YFD8F=gX4N6wSa6qPi7g@mail.gmail.com">
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<div>Yes, chainID:residue number (N:32) is working. Thanks.<br>
<br>
</div>
It might be helpful for others to include this syntax in the
error message.<br>
<br>
</div>
In general, erraser is working great for RNA modelling at medium
to low resolution!<br>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Mon, Nov 6, 2017 at 9:43 PM, Andy
Watkins <span dir="ltr"><<a
href="mailto:andy.watkins2@gmail.com" target="_blank"
moz-do-not-send="true">andy.watkins2@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Try N:32, i.e., separate chain and residue
number with a colon. I'm not sure what other formats might
be supported, but the colon-including format definitely
is.</div>
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<div class="h5">On Mon, Nov 6, 2017 at 8:30 PM, Ursula
Schulze-Gahmen <span dir="ltr"><<a
href="mailto:uschulze-gahmen@lbl.gov"
target="_blank" moz-do-not-send="true">uschulze-gahmen@lbl.gov</a>></span>
wrote:<br>
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<div>I am trying to run phenix.erraser, but I am
not able to define the single residue for
rebuilding correctly. I am getting error
messaheg: Please make sure that you include
both the chain ID and residue number, for
example 'A15'.<br>
I want to rebuild nucleotide G32 in chain N,
and defined the residue as N32. That is not
correct. What would be the correct syntax for
this case?<span
class="m_-7567115912451390739HOEnZb"><font
color="#888888"><br>
<br>
</font></span></div>
<span class="m_-7567115912451390739HOEnZb"><font
color="#888888">Ursula<br clear="all">
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<div><br>
-- <br>
<div
class="m_-7567115912451390739m_-733468334654285377gmail_signature">
<div dir="ltr">Ursula Schulze-Gahmen,
Ph.D.<br>
Project Scientist<br>
UC Berkeley, QB3<br>
360 Stanley Hall #3220<br>
Berkeley, CA 94720-3220<br>
<a href="tel:%28510%29%20643-9491"
value="+15106439491"
target="_blank"
moz-do-not-send="true">(510) 643
9491</a><br>
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-- <br>
<div class="gmail_signature" data-smartmail="gmail_signature">
<div dir="ltr">Ursula Schulze-Gahmen, Ph.D.<br>
Project Scientist<br>
UC Berkeley, QB3<br>
360 Stanley Hall #3220<br>
Berkeley, CA 94720-3220<br>
(510) 643 9491<br>
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