<div dir="ltr">Hi Ben,<div><br></div><div>For what purpose do you want to prevent the bulk solvent mask of entering pockets?</div><div>For omit maps, use polder maps. If the ligand is placed, use the default option. If nothing is placed yet, you can use the box option (<a href="https://www.phenix-online.org/documentation/reference/polder_box.html">https://www.phenix-online.org/documentation/reference/polder_box.html</a>) or place a dummy ligand in the area. </div><div><br></div><div>Best wishes,</div><div><br></div><div>Dorothee</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Mar 9, 2018 at 10:11 AM, Pavel Afonine <span dir="ltr"><<a href="mailto:pafonine@lbl.gov" target="_blank">pafonine@lbl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><span class=""><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
How can I modify the mask so it doesn't enter pockets within my model?<br>
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This is what polder map is for: stop solvent entering the region in question.<br>
<br>
Pavel<br>
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