<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=Windows-1252">
</head>
<body dir="auto">
Hi,
<div><br>
</div>
<div>Assuming it uses the standard phenix syntax you should be able to string together a series of residue selections connected by “or”.&nbsp;</div>
<div><br>
</div>
<div>See:&nbsp;<a href="https://www.phenix-online.org/documentation/reference/atom_selections.html">https://www.phenix-online.org/documentation/reference/atom_selections.html</a></div>
<div><br>
</div>
<div>It should also be noted that any type of OMIT map will only show “unambiguous” density for full occupancy ligands. If your ligands are partial occupancy (which you generally can’t determine a priori), be aware that you’ll be looking at a superposition
 of ligand density and the other (unknown) state of the crystal.&nbsp;<br>
<br>
<div id="AppleMailSignature">Thanks,
<div>Nick</div>
</div>
<div><br>
On 28 Mar 2018, at 09:42, Schulz, Eike-Christian &lt;<a href="mailto:eike.schulz@mpsd.mpg.de">eike.schulz@mpsd.mpg.de</a>&gt; wrote:<br>
<br>
</div>
<blockquote type="cite">
<div>
<meta name="Title" content="">
<meta name="Keywords" content="">
<meta name="Generator" content="Microsoft Word 15 (filtered medium)">
<style><!--
/* Font Definitions */
@font-face
        {font-family:"Cambria Math";
        panose-1:2 4 5 3 5 4 6 3 2 4;}
@font-face
        {font-family:Calibri;
        panose-1:2 15 5 2 2 2 4 3 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
        {margin:0cm;
        margin-bottom:.0001pt;
        font-size:12.0pt;
        font-family:Calibri;
        mso-fareast-language:EN-US;}
a:link, span.MsoHyperlink
        {mso-style-priority:99;
        color:#0563C1;
        text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
        {mso-style-priority:99;
        color:#954F72;
        text-decoration:underline;}
span.EmailStyle17
        {mso-style-type:personal-compose;
        font-family:Calibri;
        color:windowtext;}
span.msoIns
        {mso-style-type:export-only;
        mso-style-name:"";
        text-decoration:underline;
        color:teal;}
.MsoChpDefault
        {mso-style-type:export-only;
        font-family:Calibri;
        mso-fareast-language:EN-US;}
@page WordSection1
        {size:595.0pt 842.0pt;
        margin:70.85pt 70.85pt 2.0cm 70.85pt;}
div.WordSection1
        {page:WordSection1;}
--></style>
<div class="WordSection1">
<p class="MsoNormal"><span style="font-size:11.0pt">Dear all, <o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">To generate unambiguous ligand density in a number of structures we would like to omit the surrounding active site residues in the polder-map calculation. However, so far we were unable to figure out how
<i>non-consecutive</i> residues can be selected for phenix.polder. <o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><a href="https://www.phenix-online.org/documentation/reference/atom_selections.html">https://www.phenix-online.org/documentation/reference/atom_selections.html</a>
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">The documentation only explains how to select ranges of residues but not how to select say 5 individual residues.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Is there a syntax to achieve this ?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Thanks for your advice, <o:p>
</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Eike<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p>&nbsp;</o:p></span></p>
</div>
</div>
</blockquote>
<blockquote type="cite">
<div><span>_______________________________________________</span><br>
<span>phenixbb mailing list</span><br>
<span><a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a></span><br>
<span><a href="http://phenix-online.org/mailman/listinfo/phenixbb">http://phenix-online.org/mailman/listinfo/phenixbb</a></span><br>
<span>Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org">phenixbb-leave@phenix-online.org</a></span></div>
</blockquote>
</div>
</body>
</html>