<div dir="ltr">Aaron<div><br></div><div>Thanks for the addition email. This answers some of my other questions. I&#39;m not sure of a timeline but we are just coming to terms with this one.</div><div><br clear="all"><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div dir="ltr">Cheers<div><br></div><div>Nigel<div><br></div><div>---</div><div>Nigel W. Moriarty<br>Building 33R0349, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : 510-486-5709     Email : NWMoriarty@LBL.gov<br>Fax   : 510-486-5909       Web  : <a href="http://CCI.LBL.gov" target="_blank">CCI.LBL.gov</a></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr">On Wed, Aug 22, 2018 at 4:53 PM Aaron Oakley &lt;<a href="mailto:aarono@uow.edu.au">aarono@uow.edu.au</a>&gt; wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">



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<div>System:<span class="m_9136134973364205244Apple-tab-span" style="white-space:pre-wrap"> </span>
macOS 10.13.6</div>
<div>Phenix version:<span class="m_9136134973364205244Apple-tab-span" style="white-space:pre-wrap">
</span>phenix-1.14rc1-3177</div>
<div>Rosetta version:<span class="m_9136134973364205244Apple-tab-span" style="white-space:pre-wrap">
</span>3.9 (rosetta_src_2018.09.60072_bundle)</div>
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<div>So I rebuilt rosetta 3.9 as root and can now run &quot;Rosetta refinement&quot;. However...Rosetta refinement ran for 2 hours, slowly gobbling memory up to a maximum of 25GB before failing (error below).</div>
<div>Also gobbled up disk space, creating a 78 GB file “outtmp.map”.</div>
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<div>A memory leak issue?</div>
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<div>Thanks,</div>
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<div>a++</div>
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RuntimeError : File &#39;None&#39; not found.</div>
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Traceback:</div>
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  File &quot;/Applications/phenix-1.14rc1-3177/modules/cctbx_project/libtbx/runtime_utils.py&quot;, line 179, in run</div>
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    return_value = self.target()</div>
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  File &quot;/Applications/phenix-1.14rc1-3177/modules/cctbx_project/libtbx/runtime_utils.py&quot;, line 74, in __call__</div>
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    result = self.run()</div>
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  File &quot;/Applications/phenix-1.14rc1-3177/modules/phenix/phenix/command_line/rosetta_refine.py&quot;, line 304, in run</div>
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    return run(args=list(self.args))</div>
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  File &quot;/Applications/phenix-1.14rc1-3177/modules/phenix/phenix/command_line/rosetta_refine.py&quot;, line 191, in run</div>
<div style="margin:0px;font-stretch:normal;line-height:normal;font-family:Courier">
    debug=params.output.debug)</div>
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  File &quot;/Applications/phenix-1.14rc1-3177/modules/phenix/phenix/rosetta/refine.py&quot;, line 313, in __init__</div>
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    self.run_jobs()</div>
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  File &quot;/Applications/phenix-1.14rc1-3177/modules/phenix/phenix/rosetta/refine.py&quot;, line 388, in run_jobs</div>
<div style="margin:0px;font-stretch:normal;line-height:normal;font-family:Courier">
    check_result(result)</div>
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  File &quot;/Applications/phenix-1.14rc1-3177/modules/phenix/phenix/rosetta/refine.py&quot;, line 383, in check_result</div>
<div style="margin:0px;font-stretch:normal;line-height:normal;font-family:Courier">
    raise RuntimeError(&quot;File &#39;%s&#39; not found.&quot; % result.file_name)</div>
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