<div dir="ltr">This looks very strange. The error is in the file in the installer directories. This should not be the case. Can you provide more details on what you did to install Phenix etc.<div><br clear="all"><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div dir="ltr">Cheers<div><br></div><div>Nigel<div><br></div><div>---</div><div>Nigel W. Moriarty<br>Building 33R0349, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : 510-486-5709 Email : NWMoriarty@LBL.gov<br>Fax : 510-486-5909 Web : <a href="http://CCI.LBL.gov" target="_blank">CCI.LBL.gov</a></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr">On Sat, Oct 6, 2018 at 4:15 AM Simone Pellegrino <<a href="mailto:simonpelle81@gmail.com">simonpelle81@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div>Dear all,</div><div><br></div><div>I encounter a problem running the rosetta.run_tests after having compiled rosetta for interfacing with phenix. I have the following error:</div><div><br></div><div><br></div><div>DEBUG dumping error message<br>ERROR: Rosetta exited with status 139<br>stderr output:<br>Segmentation fault (core dumped)<br>Traceback (most recent call last):<br> File "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 307, in <module><br> run(sys.argv[1:], create_dir=True)<br> File "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 191, in run<br> debug=params.output.debug)<br> File "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/modules/phenix/phenix/rosetta/refine.py", line 313, in __init__<br> self.run_jobs()<br> File "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/modules/phenix/phenix/rosetta/refine.py", line 387, in run_jobs<br> check_result(result)<br> File "/home/Downloads/phenix-installer-1.14-3260-intel-linux-2.6-x86_64-centos6/modules/phenix/phenix/rosetta/refine.py", line 378, in check_result<br> raise RuntimeError("Aborted due to error in job %d." % result.job_id)<br>RuntimeError: Aborted due to error in job 1.<br><br></div><div>Could you please help me in solving this issue?</div><div>Many thanks in advance</div><div>Best regards</div><div>Simone<br></div><div><br>-- <br><div dir="ltr" class="m_3511104543618599767gmail_signature">Dr. Simone Pellegrino<br>I.G.B.M.C.<br>1, Rue Laurent Fries<br>67404 Illkirch Cedex<br>France</div></div></div></div></div>
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