<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
</head>
<body text="#000000" bgcolor="#FFFFFF">
<div class="moz-cite-prefix">Hi Billy,</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix"> python 2.6.6 is installed. I am
running Sci Linux; should not make a big difference to CentOS. <br>
</div>
<br>
<div class="moz-cite-prefix">yum gives:<br>
</div>
<div class="moz-cite-prefix">Installed Packages<br>
python.x86_64
2.6.6-66.el6_8
<br>
</div>
<br>
<div class="moz-cite-prefix">
<div class="moz-cite-prefix">Best, Guenter<br>
</div>
<div class="moz-cite-prefix"><br>
</div>
</div>
<div class="moz-cite-prefix"><br>
</div>
<blockquote type="cite"
cite="mid:CAHmYUcaULjbMhoB8m1FAN0hJ071v8vYJSZJ1i0r_s59Gn3YajA@mail.gmail.com">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<div dir="ltr">Hi Guenter,
<div><br>
</div>
<div>What version of python do you use? The error is saying that
the "argparse" module is not available, but it should be
available on the default system python for CentOS 6 (python
2.6.x).</div>
<div><br clear="all">
<div>
<div dir="ltr" class="gmail_signature"
data-smartmail="gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div>
<div>--</div>
<div><span
style="font-size:12.8000001907349px">Billy
K. Poon</span><br>
</div>
</div>
<div>Research Scientist, Molecular
Biophysics and Integrated
Bioimaging</div>
<div>Lawrence Berkeley National
Laboratory</div>
<div>1 Cyclotron Road, M/S 33R0345</div>
<div>Berkeley, CA 94720</div>
<div>Tel: (510) 486-5709</div>
<div>Fax: (510) 486-5909</div>
<div>Web: <a
href="https://phenix-online.org"
target="_blank"
moz-do-not-send="true">https://phenix-online.org</a></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br>
</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Tue, Feb 12, 2019 at 7:17
AM Guenter Fritz <<a
href="mailto:guenter.fritz.phenix.ccp4@gmail.com"
moz-do-not-send="true">guenter.fritz.phenix.ccp4@gmail.com</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF">
<p><font size="+1">Dear phenix developers,</font></p>
<p><font size="+1">I get errors trying to install latest
builds from 1.14.3405, 3406, 3409 64bit centos6 on
Scientific Linux machines still running 6.6 (kernel
2.6.32). </font><br>
<font size="+1"><font size="+1">1.14.3395 installed
without any problem. </font></font></p>
<p><font size="+1"><font size="+1">The downloaded file is
OK. 1.14.3409 64bit centos6 installed on Ubuntu 18.04
without any problem. </font></font></p>
<p><font size="+1">I also tried to install from source but
got the same error output (see below). I googeled some
error outputs - looks like some python error. Do I have
to update finally?<br>
</font></p>
<p><font size="+1">Best regards, <br>
</font></p>
<p><font size="+1">Guenter</font></p>
<p><font size="+1"><br>
</font></p>
<p><font size="+1">Output trying to install from source:</font></p>
<p><font size="-2" face="Courier New">[guenter@msm68
phenix-installer-dev-3409-source]$ ./install
--prefix=/home/software/PHENIX/1.14.3409/ --nproc=10<br>
Traceback (most recent call last):<br>
File "./bin/install.py", line 20, in <module><br>
from libtbx.auto_build import install_distribution<br>
File
"/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/install_distribution.py",
line 75, in <module><br>
from libtbx.auto_build import install_base_packages<br>
File
"/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/install_base_packages.py",
line 28, in <module><br>
from .package_defs import *<br>
File
"/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/package_defs.py",
line 18, in <module><br>
from .bootstrap import Toolbox<br>
File
"/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/bootstrap.py",
line 14, in <module><br>
import argparse<br>
ImportError: No module named argparse</font><font
size="+1"><br>
<br>
</font></p>
<p><font size="+1">Similar from an installer:</font></p>
<p><font face="Courier New">[guenter@msm68
phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6]$
./install --prefix=/home/software/PHENIX/1.14.3405/ <br>
Traceback (most recent call last):<br>
File "./bin/install.py", line 20, in <module><br>
from libtbx.auto_build import install_distribution<br>
File
"/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
line 75, in <module><br>
from libtbx.auto_build import install_base_packages<br>
File
"/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_base_packages.py",
line 28, in <module><br>
from .package_defs import *<br>
File
"/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/package_defs.py",
line 18, in <module><br>
from .bootstrap import Toolbox<br>
File
"/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/bootstrap.py",
line 14, in <module><br>
import argparse<br>
ImportError: No module named argparse</font><font
size="+1"><br>
<br>
</font></p>
<p><font size="+1"><br>
</font></p>
</div>
_______________________________________________<br>
phenixbb mailing list<br>
<a href="mailto:phenixbb@phenix-online.org" target="_blank"
moz-do-not-send="true">phenixbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/phenixbb"
rel="noreferrer" target="_blank" moz-do-not-send="true">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
Unsubscribe: <a
href="mailto:phenixbb-leave@phenix-online.org"
target="_blank" moz-do-not-send="true">phenixbb-leave@phenix-online.org</a></blockquote>
</div>
</blockquote>
<p><br>
</p>
</body>
</html>