<html>
<head>
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
</head>
<body text="#000000" bgcolor="#FFFFFF">
Can you send the file to me off-list? I'll have a closer look once I
have the file.<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 3/11/19 16:10, yong zhou wrote:<br>
</div>
<blockquote type="cite"
cite="mid:TY2PR02MB31025EDF82224D15C2C65BA8F6480@TY2PR02MB3102.apcprd02.prod.outlook.com">
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
<div style="font-family: Calibri, Helvetica, sans-serif;
font-size: 12pt; color: rgb(0, 0, 0);">
<p style="font-size: 14px; font-family: SimSun">Hi,</p>
<p style="font-size: 14px; font-family: SimSun"><br>
</p>
<p style="font-size: 14px; font-family: SimSun">Recently I
deposited a structure to PDB. However, I was told t<span>here
is a large difference between reported (77.89%) and
calculated (88.36%) values for data completeness.</span></p>
<p style="font-size: 14px; font-family: SimSun">In order to
confirm the information, I used the command
phenix.reflection_statistics and the result is as following.</p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Resolution
range: 31.6787 1.91132</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Completeness
in resolution range: 0.783333</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Completeness
with d_max=infinity: 0.783193</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Anomalous
completeness in resolution range: 0.599544</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Bijvoet
pairs: 15786</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Lone
Bijvoet mates: 9291</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Mean
anomalous difference: 0.0671</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255); min-height: 21px">
<span style="font-variant-ligatures: no-common-ligatures"></span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Space
group of the intensities: P 2 2 2</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Space
group of the metric:<span>� � �<span>�</span></span>P m m m</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures"><span>�<span>�</span></span>Tolerance
used in the determination of the</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures"><span>�<span>�</span></span>lattice
symmetry: 3 degrees</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Possible
twin laws: None</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255); min-height: 21px">
<span style="font-variant-ligatures: no-common-ligatures"></span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">Completeness
of 4-8-(GlcNAc)5/output4-8.sca:I(+),SIGI(+),I(-),SIGI(-):</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">unused:<span>�</span><span>�
� � �<span>�</span></span>- 31.6830 [<span>� �<span>�</span></span>0/9<span>�
�<span>�</span></span>] 0.000</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">bin<span>�<span>�</span></span>1:
31.6830 -<span>�<span>�</span></span>1.9113 [28083/29673]
0.946</span></p>
<p style="margin: 0px; font: 400 18px Menlo; background-color:
rgb(255, 255, 255)">
<span style="font-variant-ligatures: no-common-ligatures">unused:<span>�<span>�</span></span>1.9113
-<span>�</span><span>� � � �<span>�</span></span>[<span>� �<span>�</span></span>0/0<span>�
�<span>�</span></span>]</span></p>
<p style="font-size: 14px; font-family: SimSun">There are two
completeness values 0.783 and 0.946.</p>
<p style="font-size: 14px; font-family: SimSun">So which is the
correct one?</p>
<p style="font-size: 14px; font-family: SimSun">Look forward to
the reply.</p>
<p style="font-size: 14px; font-family: SimSun"><br>
</p>
<p style="font-size: 14px; font-family: SimSun">Yong Zhou</p>
<br>
</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<pre class="moz-quote-pre" wrap="">_______________________________________________
phenixbb mailing list
<a class="moz-txt-link-abbreviated" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a>
<a class="moz-txt-link-freetext" href="http://phenix-online.org/mailman/listinfo/phenixbb">http://phenix-online.org/mailman/listinfo/phenixbb</a>
Unsubscribe: <a class="moz-txt-link-abbreviated" href="mailto:phenixbb-leave@phenix-online.org">phenixbb-leave@phenix-online.org</a></pre>
</blockquote>
<br>
</body>
</html>