<html>
  <head>
    <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
  </head>
  <body text="#000000" bgcolor="#FFFFFF">
    Hi Abhishek,<br>
    <br>
    I'm confident you can do it, and it is explained to some degree
    here:<br>
    <br>
    "13 typical occupancy refinement scenarios and available options in
    phenix.refine"<br>
    <a href="http://phenix-online.org/newsletter/">http://phenix-online.org/newsletter/</a><br>
    <br>
    In the GUI it should be straightforward, if not please come back to
    us with *specific* questions.<br>
    <br>
    Pavel<br>
    <br>
    <br>
    <div class="moz-cite-prefix">On 6/18/19 23:48, ABHISHEK SUMAN wrote:<br>
    </div>
    <blockquote type="cite"
cite="mid:CAM-9OOWdhR4NCxWECVSjn5oRmQyqyLXMkZ6xu04Rc3qxpaDQ8w@mail.gmail.com">
      <meta http-equiv="content-type" content="text/html; charset=UTF-8">
      <div dir="ltr">
        <div dir="ltr">
          <div class="gmail_default" style="font-family:trebuchet
            ms,sans-serif;font-size:small">Hello All,<br>
            <br>
            I am solving a X-ray crystal structure of protein-DNA
            complex at 2.3 Angs. In my structure, it seems like the the
            duplex DNA is bound in two different conformations, and both
            the conformations are occupied in same density. I wish to
            know how to refine the alternative conformations of the DNA
            duplex in Phenix. In am using Phenix GUI. <br>
            <br>
            Thanks<br>
            Abhishek</div>
          <div>
            <div dir="ltr" class="gmail_signature">
              <div dir="ltr">
                <div>
                  <div dir="ltr">
                    <div dir="ltr">
                      <div dir="ltr">
                        <div dir="ltr">
                          <div dir="ltr">
                            <div>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><b><span
style="font-size:12pt;font-family:&quot;Courier
                                    New&quot;;color:rgb(0,77,187)"><span
                                      class="gmail_default"
                                      style="font-family:trebuchet
                                      ms,sans-serif;font-size:small">______________________________________________</span><br>
                                  </span></b></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><b><span
style="font-size:12pt;font-family:&quot;Courier
                                    New&quot;;color:rgb(0,77,187)">Abhishek
                                    Suman</span></b><span
                                  style="font-family:&quot;Courier
                                  New&quot;"><span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><i><span
                                    style="font-family:&quot;Courier
                                    New&quot;;color:rgb(0,77,187)">Research
                                    Scholar, PhD</span></i><span
                                  style="font-family:&quot;Courier
                                  New&quot;"><span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">C/o,
                                  Dr. Rajakumara Eerappa<span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">Macromolecular
                                  Structural Biology Group<span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">Department
                                  of Biotechnology<span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">R#
                                  517,315, Academic Block - A<span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">Indian
                                  Institute of Technology Hyderabad<span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">Kandi
                                  502 285 Sangareddy<span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">Telangana
                                  INDIA<span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">Contact: +91 91002 74548
                                  (O)<span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">         +91 80843 11898
                                  (R)<span></span></span></p>
                              <p class="MsoNormal"
                                style="margin-bottom:0.0001pt;line-height:normal"><span
                                  style="font-family:&quot;Courier
                                  New&quot;">Email: <a
                                    href="mailto:abhisheks.iith@gmail.com"
                                    target="_blank"
                                    moz-do-not-send="true">abhisheks.iith@gmail.com</a></span></p>
                              <div><span
                                  style="font-family:Verdana,sans-serif;font-size:9.5pt">-----------------------------------------------------------------</span><br>
                              </div>
                              <p style="font-size:12.8px;margin:0in 0in
0.0001pt;background-image:initial;background-position:initial;background-repeat:initial">
                              </p>
                              <p style="font-size:12.8px;margin:0in 0in
0.0001pt;background-image:initial;background-position:initial;background-repeat:initial"><b><span
style="font-size:10pt;font-family:Verdana,sans-serif;color:green">Please
                                    don't print this e-mail or
                                    attachment unless necessary.
                                    Preserve trees on the planet.</span></b><span
style="font-size:9.5pt;font-family:Arial,sans-serif"><span></span></span></p>
                            </div>
                            <div style="font-size:12.8px"><img
src="https://docs.google.com/uc?export=download&amp;id=0B6Hg5w44vq6_cGRFU2dsSlRCNGM&amp;revid=0B6Hg5w44vq6_OHljTTdHQ2lGSHhreEEralRCRG5CQWFzT3NNPQ"
                                moz-do-not-send="true" width="200"
                                height="57"><br>
                            </div>
                          </div>
                        </div>
                      </div>
                    </div>
                  </div>
                </div>
              </div>
            </div>
          </div>
        </div>
      </div>
      <br>
      <fieldset class="mimeAttachmentHeader"></fieldset>
      <pre class="moz-quote-pre" wrap="">_______________________________________________
phenixbb mailing list
<a class="moz-txt-link-abbreviated" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a>
<a class="moz-txt-link-freetext" href="http://phenix-online.org/mailman/listinfo/phenixbb">http://phenix-online.org/mailman/listinfo/phenixbb</a>
Unsubscribe: <a class="moz-txt-link-abbreviated" href="mailto:phenixbb-leave@phenix-online.org">phenixbb-leave@phenix-online.org</a></pre>
    </blockquote>
    <br>
  </body>
</html>