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    Hi Mirek,<br>
    <br>
    based on your description this sounds like a bug or undesired
    feature at least! Could you please send me the files so that I can
    repeat your experience myself and see what's happening?<br>
    <br>
    As a work-around you can re-generate flags as Tim suggested but
    chances are someone annoying like myself asks to prove no memory
    left from previous set and that is very hard to prove, and if not
    proven there will be a doubt! Although indeed, re-generating and
    running some refinement should be just fine, I agree!<br>
    <br>
    Good luck!<br>
    Pavel<br>
    <br>
    <br>
    <div class="moz-cite-prefix">On 6/24/19 21:09, Cygler, Miroslaw
      wrote:<br>
    </div>
    <blockquote type="cite"
      cite="mid:64961FF6-4D70-40E8-A167-D2E5FED6034E@usask.ca">
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      Hi Phenixers,
      <div class=""><span class="Apple-tab-span" style="white-space:pre"></span>I
        have copied mtz file to a new file with a lower resolution limit
        using the "Reflection file editor” tool. I copied all arrays to
        the output file. When I attempted to continue refinement with
        the new mtz file, a message appears saying that there are no
        R-free flags in the mtz file. Yet, the new file contains the
        R-free-flags column but the values are inverted, 1 is changed to
        0 and 0 is changed to 1. In the output option dialog the box
        “Preserve original flag values” was checked.</div>
      <div class=""><span class="Apple-tab-span" style="white-space:pre"></span>How
        to fix this?</div>
      <div class=""><span class="Apple-tab-span" style="white-space:pre"></span>Thanks,<br
          class="">
        <div class=""><span class="Apple-style-span"
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            -webkit-text-decorations-in-effect: none;
            -webkit-text-size-adjust: auto; -webkit-text-stroke-width:
            0px; "><span class="Apple-style-span"
              style="border-collapse: separate; color: rgb(0, 0, 0);
              font-family: Helvetica; font-style: normal; font-variant:
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              line-height: normal; orphans: 2; text-align: -webkit-auto;
              text-indent: 0px; text-transform: none; white-space:
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              -webkit-border-horizontal-spacing: 0px;
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              -webkit-text-decorations-in-effect: none;
              -webkit-text-size-adjust: auto; -webkit-text-stroke-width:
              0px; ">
              <div style="word-wrap: break-word; -webkit-nbsp-mode:
                space; -webkit-line-break: after-white-space; " class="">
                <span class="Apple-style-span" style="border-collapse:
                  separate; color: rgb(0, 0, 0); font-family: Helvetica;
                  font-style: normal; font-variant: normal; font-weight:
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                  -webkit-border-horizontal-spacing: 0px;
                  -webkit-border-vertical-spacing: 0px;
                  -webkit-text-decorations-in-effect: none;
                  -webkit-text-size-adjust: auto;
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                  <div style="word-wrap: break-word; -webkit-nbsp-mode:
                    space; -webkit-line-break: after-white-space; "
                    class="">
                    <span class="Apple-style-span"
                      style="border-collapse: separate; color: rgb(0, 0,
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                      letter-spacing: normal; line-height: normal;
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                      -webkit-text-decorations-in-effect: none;
                      -webkit-text-size-adjust: auto;
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                      <div style="word-wrap: break-word;
                        -webkit-nbsp-mode: space; -webkit-line-break:
                        after-white-space; " class="">
                        <span class="Apple-style-span"
                          style="border-collapse: separate; color:
                          rgb(0, 0, 0); font-family: Helvetica;
                          font-style: normal; font-variant: normal;
                          font-weight: normal; letter-spacing: normal;
                          line-height: normal; orphans: 2; text-align:
                          -webkit-auto; text-indent: 0px;
                          text-transform: none; white-space: normal;
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                          -webkit-border-vertical-spacing: 0px;
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                            class="">
                            <span class="Apple-style-span"
                              style="border-collapse: separate; color:
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                              -webkit-border-vertical-spacing: 0px;
                              -webkit-text-decorations-in-effect: none;
                              -webkit-text-size-adjust: auto;
                              -webkit-text-stroke-width: 0px; ">
                              <div style="word-wrap: break-word;
                                -webkit-nbsp-mode: space;
                                -webkit-line-break: after-white-space; "
                                class="">
                                <span class="Apple-style-span"
                                  style="border-collapse: separate;
                                  color: rgb(0, 0, 0); font-family:
                                  Helvetica; font-style: normal;
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                                  normal; letter-spacing: normal;
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                                  <div style="word-wrap: break-word;
                                    -webkit-nbsp-mode: space;
                                    -webkit-line-break:
                                    after-white-space; " class="">
                                    <span class="Apple-style-span"
                                      style="border-collapse: separate;
                                      color: rgb(0, 0, 0); font-family:
                                      Helvetica; font-style: normal;
                                      font-variant: normal; font-weight:
                                      normal; letter-spacing: normal;
                                      line-height: normal; orphans: 2;
                                      text-align: -webkit-auto;
                                      text-indent: 0px; text-transform:
                                      none; white-space: normal; widows:
                                      2; word-spacing: 0px;
                                      -webkit-border-horizontal-spacing:
                                      0px;
                                      -webkit-border-vertical-spacing:
                                      0px;
                                      -webkit-text-decorations-in-effect:
                                      none; -webkit-text-size-adjust:
                                      auto; -webkit-text-stroke-width:
                                      0px; ">
                                      <div style="word-wrap: break-word;
                                        -webkit-nbsp-mode: space;
                                        -webkit-line-break:
                                        after-white-space; " class="">
                                        <span class="Apple-style-span"
                                          style="border-collapse:
                                          separate; color: rgb(0, 0, 0);
                                          font-family: Helvetica;
                                          font-style: normal;
                                          font-variant: normal;
                                          font-weight: normal;
                                          letter-spacing: normal;
                                          line-height: normal; orphans:
                                          2; text-align: -webkit-auto;
                                          text-indent: 0px;
                                          text-transform: none;
                                          white-space: normal; widows:
                                          2; word-spacing: 0px;
                                          -webkit-border-horizontal-spacing:
                                          0px;
                                          -webkit-border-vertical-spacing:
                                          0px;
                                          -webkit-text-decorations-in-effect:
                                          none;
                                          -webkit-text-size-adjust:
                                          auto;
                                          -webkit-text-stroke-width:
                                          0px; ">
                                          <div style="word-wrap:
                                            break-word;
                                            -webkit-nbsp-mode: space;
                                            -webkit-line-break:
                                            after-white-space; "
                                            class="">
                                            <span
                                              class="Apple-style-span"
                                              style="border-collapse:
                                              separate; color: rgb(0, 0,
                                              0); font-family:
                                              Helvetica; font-style:
                                              normal; font-variant:
                                              normal; font-weight:
                                              normal; letter-spacing:
                                              normal; line-height:
                                              normal; orphans: 2;
                                              text-align: -webkit-auto;
                                              text-indent: 0px;
                                              text-transform: none;
                                              white-space: normal;
                                              widows: 2; word-spacing:
                                              0px;
                                              -webkit-border-horizontal-spacing:
                                              0px;
                                              -webkit-border-vertical-spacing:
                                              0px;
                                              -webkit-text-decorations-in-effect:
                                              none;
                                              -webkit-text-size-adjust:
                                              auto;
                                              -webkit-text-stroke-width:
                                              0px; "><span
                                                class="Apple-style-span"
                                                style="border-collapse:
                                                separate; color: rgb(0,
                                                0, 0); font-family:
                                                Helvetica; font-style:
                                                normal; font-variant:
                                                normal; font-weight:
                                                normal; letter-spacing:
                                                normal; line-height:
                                                normal; orphans: 2;
                                                text-align:
                                                -webkit-auto;
                                                text-indent: 0px;
                                                text-transform: none;
                                                white-space: normal;
                                                widows: 2; word-spacing:
                                                0px;
                                                -webkit-border-horizontal-spacing:
                                                0px;
                                                -webkit-border-vertical-spacing:
                                                0px;
                                                -webkit-text-decorations-in-effect:
                                                none;
                                                -webkit-text-size-adjust:
                                                auto;
                                                -webkit-text-stroke-width:
                                                0px; ">
                                                <div style="word-wrap:
                                                  break-word;
                                                  -webkit-nbsp-mode:
                                                  space;
                                                  -webkit-line-break:
                                                  after-white-space; "
                                                  class="">
                                                  <div class=""><span class="Apple-tab-span" style="white-space: pre; ">

</span>Mirek</div>
                                                  <div class=""><br
                                                      class="">
                                                  </div>
                                                </div>
                                              </span></span></div>
                                        </span></div>
                                    </span></div>
                                </span></div>
                            </span></div>
                        </span></div>
                    </span></div>
                </span></div>
            </span></span><br class="Apple-interchange-newline">
        </div>
        <br class="">
      </div>
      <br>
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