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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Hi Billy,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">When I add files - individually - the initial data type is automatically set to 'Real map' which I then alter depending on whether
maps are full or half maps. Also when I modify the first datatype from Real -> full, the other two maps have their data type set to unknown - which I then change to half map.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Phenix version 1.17-3644<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">OS: Centos6.6 / 2.6.32-504.el6.x86_64<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">In contrast if I run phenix 1.16-3549 on a Centos7 system (3.10.0-1062.1.1.el7.x86_64), the gui behaviour for the validate task is
different. The first map I add gets a datatype of 'Full map' and the two halfmaps are then assigned to 'Real map' which I then change to 'half map'. Running this job gives expected file assignments and behaviour.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">HTH,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Ashley<o:p></o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Billy Poon <BKPoon@lbl.gov>
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<b>Sent:</b> 25 October 2019 17:49<br>
<b>To:</b> Ashley Pike <ashley.pike@sgc.ox.ac.uk><br>
<b>Cc:</b> phenixbb@phenix-online.org<br>
<b>Subject:</b> Re: [phenixbb] GUI reorders file data type in EM validation task<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi Ashley,<o:p></o:p></p>
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<p class="MsoNormal">Can you tell me which operating system and version you're using? Also, when you add the files, do you add them all at once or one at a time? Thanks!<o:p></o:p></p>
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<p class="MsoNormal">--<o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:9.5pt">Billy K. Poon</span><o:p></o:p></p>
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<p class="MsoNormal">Research Scientist, Molecular Biophysics and Integrated Bioimaging<o:p></o:p></p>
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<p class="MsoNormal">Lawrence Berkeley National Laboratory<o:p></o:p></p>
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<p class="MsoNormal">1 Cyclotron Road, M/S 33R0345<o:p></o:p></p>
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<p class="MsoNormal">Berkeley, CA 94720<o:p></o:p></p>
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<p class="MsoNormal">Tel: (510) 486-5709<o:p></o:p></p>
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<p class="MsoNormal">Fax: (510) 486-5909<o:p></o:p></p>
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<p class="MsoNormal">Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Thu, Oct 24, 2019 at 3:23 AM Ashley Pike <<a href="mailto:ashley.pike@sgc.ox.ac.uk">ashley.pike@sgc.ox.ac.uk</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I am having problems convincing the GUI which EM map is which for halfmap validation. Version is 1.17-3644<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Here is input:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><img border="0" width="1077" height="200" style="width:11.2187in;height:2.0833in" id="gmail-m_-3095626489647531218Picture_x0020_1" src="cid:image001.png@01D58F3E.688E05A0" alt="cid:image001.png@01D58F3E.688E05A0"><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">and what is written to Summary tab:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><img border="0" width="672" height="163" style="width:7.0in;height:1.6979in" id="gmail-m_-3095626489647531218Picture_x0020_2" src="cid:image002.png@01D58F3E.688E05A0" alt="cid:image002.png@01D58F3E.688E05A0"><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Any tricks to getting this to work? Editing the .eff file written by the gui is an option but running phenix.validation_cryoem on the command line doesn’t seem to produce much viewable
output.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Cheers,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Ashley<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">--<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Dr. Ashley Pike<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Membrane Protein Crystallography | Structural Genomics Consortium | University of Oxford<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Phone: +44 (0)1865 617576 | FAX: +44 (0)1865 617575 |
<a href="mailto:ashley.pike@sgc.ox.ac.uk" target="_blank"><span style="color:#0563C1">ashley.pike@sgc.ox.ac.uk</span></a> |
<a href="http://www.thesgc.org/" target="_blank"><span style="color:#0563C1">www.thesgc.org</span></a><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Address: Structural Genomics Consortium, Old Road Campus Research Building, Headington, Oxford OX3 7DQ, UK<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal">_______________________________________________<br>
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