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Hi Nicolas,<br>
<br>
<blockquote type="cite"
cite="mid:6ef2818ff7bc464abb3cd23c028ed041@nyulangone.org">
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charset=windows-1252">
<style type="text/css" style="display:none;"><!-- P {margin-top:0;margin-bottom:0;} --></style>
<div id="divtagdefaultwrapper" dir="ltr" style="font-size: 11pt;
color: rgb(0, 0, 0); font-family: Tahoma, Geneva, sans-serif,
"EmojiFont", "Apple Color Emoji",
"Segoe UI Emoji", NotoColorEmoji, "Segoe UI
Symbol", "Android Emoji", EmojiSymbols;">�� We
had a question regarding how the <span>phenix.real_space_refine</span>
works when used to refine CryoEM models with hydrogens: are
hydrogens treated as riding or are they explicitly refined?�</div>
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<br>
yes, they are riding (although the way real-space refinement work in
phenix.real_space_refine it doesn't matter!).<br>
Also, they are not included into map target function calculation.<br>
<br>
Pavel<br>
<br>
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