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<div dir="auto">Hi,
<div dir="auto">The closest option that comes to mind to do what you're looking for is to take the Euler angles+translations for each of the monomers in the .sol file (or at the top of the final pdb file) and apply each of them to the initial model using any
transformation program of your choice.<br>
<div dir="auto">I am more familiar with running Phaser using the ccp4 gui but it shouldn't be very different under Phenix. </div>
<div dir="auto">Phaser people may well suggest a more elegant option.</div>
<div dir="auto">Stay safe,</div>
<div dir="auto">Boaz<br>
<br>
<div dir="auto">Boaz Shaanan, Ph.D.<br>
Department of Life Sciences<br>
Ben Gurion University of the Negev<br>
Beer Sheva<br>
Israel</div>
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<div class="gmail_extra"><br>
<div class="gmail_quote">On Jul 27, 2020 16:02, Johannes Cramer <johannes.cramer@gmail.com> wrote:<br type="attribution">
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<div dir="ltr">Dear phenix board,
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<div>does anyone of you know if there is an option in phaser-MR to output a pdb after each placed component?</div>
<div>For example: I suspect there to be 5 molecules in the AU. I start a replacement with 5 molecules and phaser places 1 (I would like to inspect that), 2 (again, I would like to look at the e.g. top 10 results), 3 and so on...</div>
<div>Is that possible? I couldn't find the option in the gui or in the phenix documentation, but maybe in the CLI?</div>
<div>I know I can run one after the other, but that would potentially waste CPU time until I find time to inspect them.</div>
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<div>Cheers,</div>
<div>Johannes</div>
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