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    Hi Shanti Pal,<br>
    <br>
    this kind of outcome is definitely not expected. Could you please
    share map and model files and then I will investigate?<br>
    <br>
    Thanks,<br>
    Pavel<br>
    <br>
    <div class="moz-cite-prefix">On 8/3/20 16:02, Shanti Pal Gangwar
      wrote:<br>
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cite="mid:CAH2QnPBcEoYud2JWm2eG_EA9FtogxUgr0JugR9ihZjaGWa8K5w@mail.gmail.com">
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        <div>Dear all,</div>
        <div>I am trying to refine a Cryo-EM map at a decent resolution.
          The model was fit into the map in chimera and refined against
          the same map in Real space refinement in Phenix but after the
          run, a significant part of the model moved out of the density.</div>
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        <div>I would appreciate any suggestion/strategy to solve this
          issue.<br>
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        <div>Thank you</div>
        <div>Shanti Pal<br>
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