<div dir="ltr"><div dir="ltr">Hi Vatsal,</div><div dir="ltr"><br><div>I'm sorry for the trouble! You can check to see if ligand fitting is generally working on your computer with a test that comes with your phenix installation. You can type in a command window:</div><div><br></div><div> phenix_regression.list LigandFit_std<br></div><div><br></div><div>This will print out something like this:</div><div><br></div><div>Listing of available Phenix regression tests<br>Total of 1705 tests available. <br>Listing 1 tests matching of the following strings: LigandFit_std</div><div><br>libtbx.python "/Users/terwill/unix/PHENIX/build_2020-04-24/modules/phenix_regression/wizards/LigandFit_tests/test_LigandFit_std/tst_LigandFit_std.py"<br></div><div><br></div><div>Try running the test that is printed out...it should run and say "OK" when it is done. If not...let me know!</div><div><br></div><div>Then to address your question more directly...by "recently", do you mean that you have a new version of Phenix, or new data, or both?<br></div><div><br></div><div>If new data, best thing to try is rerun with old data, then change things until you are running with new data and see when something fails. If that doesn't show what the problem is, I'm happy to help (if you send the data and log file I can debug it here)</div><div><br></div><div>If you have a new version of Phenix and the same data that worked with an old version does not work any more, let me know as above.</div><div><br></div><div>If you have a new version of Phenix and new data, can you run with old data, old version, then old/new, then new/old, then new/new and see which one causes the problem.</div><div><br>Thanks!</div><div>-Tom T</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Sep 17, 2020 at 9:38 AM Vatsal Purohit <<a href="mailto:vpurohi@purdue.edu">vpurohi@purdue.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div lang="EN-IN">
<div class="gmail-m_-8670837208395706853WordSection1">
<p class="MsoNormal">Hi,</p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">I’ve been using the Ligandfit function to location ligand binding sites using electron density obtained without any ligands in the structure model. However, recently, the program has been giving me the following error while trying to open
the resolve maps:</p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">Sorry: None of the resolve versions worked</p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">Is there something I can do to try and fix this?</p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">Any advice would be appreciated.</p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">Regards,</p>
<p class="MsoNormal">Vatsal</p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">Sent from <a href="https://go.microsoft.com/fwlink/?LinkId=550986" target="_blank">
Mail</a> for Windows 10</p>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
</div>
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Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a></blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr">Thomas C Terwilliger<div>Laboratory Fellow, Los Alamos National Laboratory</div><div>Senior Scientist, New Mexico Consortium</div><div>100 Entrada Dr, Los Alamos, NM 87544</div><div>Email: <a href="mailto:tterwilliger@newmexicoconsortium.org" target="_blank">tterwilliger@newmexicoconsortium.org</a></div><div>Tel: 505-431-0010</div><div><br></div></div></div></div></div></div></div></div></div></div></div>