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Hi Ahmad,<br>
<br>
no, it can take maps as Fourier maps or real-space maps:<br>
<br>
phenix.match_maps A.pdb B.pdb A.mtz B.mtz<br>
phenix.match_maps A.pdb A.mtz B.pdb B.mtz<br>
phenix.match_maps A.pdb A.mrc B.pdb B.mrc<br>
phenix.match_maps A.pdb B.pdb A.mrc B.mrc<br>
<br>
and it is general and works with any of 230 space groups and
matching maps can be in different unit cells.<br>
<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 12/22/20 12:36, Ahmad Khalifa wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CAL1o8vMPs0YSaLxcfnYcKPEbersqbh5bnPaUsQN6Sp4yTXV6pQ@mail.gmail.com">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<div dir="auto">
<div>Thanks Pavel but it only takes mtz as input. I'm also only
interested in the transformation matrix to suppose one map
onto the other in their original frame of reference without
superposing the maps per se. <br>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Sun, Dec 20, 2020, 2:19
PM Pavel Afonine <<a href="mailto:pafonine@lbl.gov"
moz-do-not-send="true">pafonine@lbl.gov</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="auto">Hi Ahmad,
<div dir="auto">phenix.match_maps is the tool to
superpose maps and models.</div>
<div dir="auto">Pavel</div>
<div dir="auto"><br>
</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Sun, Dec 20, 2020,
1:38 PM Ahmad Khalifa <<a
href="mailto:underoath006@gmail.com" target="_blank"
rel="noreferrer" moz-do-not-send="true">underoath006@gmail.com</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">I have two density maps that I'm trying
to align, or more precisely, calculate the
transformation matrix (rotation and translation) of
their alignment (moving one map and aligning it with
the other map). Is there a way to accomplish that
using phenix or any other tool?
<div><br>
</div>
<div>Thanks a lot and happy holidays. </div>
</div>
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