<div dir="ltr">Hi,<div><br></div><div>Did you set the path to Coot in the Phenix preferences?</div><div><br></div><div>Also, check some info here:</div><div><a href="https://www.phenix-online.org/documentation/coot.html">https://www.phenix-online.org/documentation/coot.html</a><br></div><div><br></div><div>Dorothee</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Feb 11, 2021 at 3:40 PM Badmalia, Maulik <<a href="mailto:maulik.badmalia@uleth.ca">maulik.badmalia@uleth.ca</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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hello team phenix,</div>
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I hope this email finds you well. </div>
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I recently downloaded phenix for analysing our cryoEM data, before moving to the data analysis I decided to try the tutorial. I decided to use the autosharpen option first, I was able to access the tutorial but when I clicked on coot I repeatedly got a message
saying that "Sorry: the 'coot' command could not be located. </div>
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We have installed Coot to run on a CentOS platform and has the latest version of Coot on the system. I am a novice with linux and phenix. So any help in this regard would be highly appreciated. Do let me know if you have any questions. </div>
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Regards,</div>
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Maulik</div>
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<span style="font-size:14.6667px;color:rgb(51,51,51)"><b>Maulik D. Badmalia</b></span></p>
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<span lang="EN-US" style="margin:0px;font-size:11pt;color:rgb(51,51,51)"><b>Postdoctoral Researcher</b></span></p>
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<span style="margin:0px;font-size:11pt;color:rgb(51,51,51)"><b>Laboratory of Medicinal Biophysics</b></span></p>
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<span lang="EN-US" style="margin:0px;font-size:11pt;color:rgb(51,51,51)"><b>Alberta RNA Research and Training Institute</b></span></p>
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<span lang="EN-US" style="margin:0px;font-size:11pt;color:rgb(51,51,51)"><b>Dept. of Chemistry & Biochemistry</b></span></p>
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<span lang="EN-US" style="margin:0px;font-size:11pt;color:rgb(51,51,51)"><b>University of Lethbridge, Lethbridge, AB, Canada</b></span></p>
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Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a></blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging<br></div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org/" style="color:rgb(17,85,204)" target="_blank">https://phenix-online.org</a></div></div></div>