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<p>Hi Robert,</p>
<p>if this error occurs in the latest available nightly build then
please send me input files and briefly describe steps that lead to
the crash. -Thanks!<br>
Pavel<br>
</p>
<div class="moz-cite-prefix">On 11/15/21 13:04, Robert Munoz wrote:<br>
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<blockquote type="cite"
cite="mid:CALTYmRGYoMUL7Jvp=0CcgS621O4CUxUOii-K9-pd3zuF6oGvzA@mail.gmail.com">
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<div dir="ltr">User name: Robert Munoz<br>
E-mail address: <a href="mailto:robertm@lbl.gov"
moz-do-not-send="true" class="moz-txt-link-freetext">robertm@lbl.gov</a><br>
Version: 1.18.2-3874<br>
Platform: mac-intel-osx-x86_64<br>
Comments: Trying to refinement using locscale out map<br>
<br>
Traceback:<br>
RuntimeError : cctbx Internal Error:
/Users/builder/slave/phenix-nightly-mac-intel-osx-x86_64/modules/cctbx_project/cctbx/maptbx/resolution.h(38):
CCTBX_ASSERT(sum_all != 0.) failure.<br>
Traceback:<br>
File
"/Applications/phenix-1.18.2-3874/modules/cctbx_project/libtbx/runtime_utils.py",
line 181, in run<br>
return_value = self.target()<br>
<br>
File
"/Applications/phenix-1.18.2-3874/modules/cctbx_project/libtbx/runtime_utils.py",
line 76, in __call__<br>
result = self.run()<br>
<br>
File
"/Applications/phenix-1.18.2-3874/modules/phenix/phenix/command_line/real_space_refine.py",
line 908, in run<br>
self.result = run(args=self.args, validated=True,
log=sys.stdout)<br>
<br>
File
"/Applications/phenix-1.18.2-3874/modules/phenix/phenix/command_line/real_space_refine.py",
line 581, in __init__<br>
self.caller(func = self.initialize,
prefix="Initialize")<br>
<br>
File
"/Applications/phenix-1.18.2-3874/modules/phenix/phenix/command_line/real_space_refine.py",
line 619, in caller<br>
status = func(prefix=prefix, **kwargs)<br>
<br>
File
"/Applications/phenix-1.18.2-3874/modules/phenix/phenix/command_line/real_space_refine.py",
line 696, in initialize<br>
self.inputs = self.process_inputs()<br>
<br>
File
"/Applications/phenix-1.18.2-3874/modules/phenix/phenix/command_line/real_space_refine.py",
line 675, in process_inputs<br>
return
process_inputs_stage_1(process_inputs_stage_0_object=pis_0,
log=self.log)<br>
<br>
File
"/Applications/phenix-1.18.2-3874/modules/phenix/phenix/command_line/real_space_refine.py",
line 403, in process_inputs_stage_1<br>
crystal_symmetry = model.crystal_symmetry()).result.d99<br>
<br>
File
"/Applications/phenix-1.18.2-3874/modules/cctbx_project/cctbx/maptbx/__init__.py",
line 117, in __init__<br>
d_max = self.d_max)<br>
<br>
<br>
<br>
Platform info:<br>
__FILE__ =
/Users/builder/slave/phenix-nightly-mac-intel-osx-x86_64/modules/cctbx_project/boost_adaptbx/meta_ext.cpp<br>
__DATE__ = May 17 2020<br>
__TIME__ = 22:35:27<br>
__TIMESTAMP__ = Thu Feb 27 10:57:04 2020<br>
__x86_64__<br>
__APPLE_CC__ = 6000<br>
__GNUC__ = 4<br>
__GNUC_MINOR__ = 2<br>
__GNUC_PATCHLEVEL__ = 1<br>
__clang__<br>
__clang_major__ = 11<br>
__clang_minor__ = 0<br>
__clang_patchlevel__ = 0<br>
__clang_version__ = 11.0.0 (clang-1100.0.33.17)<br>
__llvm__<br>
__GXX_WEAK__ = 1<br>
__LP64__ = 1<br>
__VERSION__ = 4.2.1 Compatible Apple LLVM 11.0.0
(clang-1100.0.33.17)<br>
FE_INEXACT = 32<br>
FE_DIVBYZERO = 4<br>
FE_UNDERFLOW = 16<br>
FE_OVERFLOW = 8<br>
FE_INVALID = 1<br>
FE_ALL_EXCEPT = 63<br>
__SSE2__ = 1<br>
BOOST_LIB_VERSION = 1_63<br>
PY_VERSION = 2.7.15<br>
PYTHON_API_VERSION = 1013<br>
sizeof(bool) = 1<br>
sizeof(short) = 2<br>
sizeof(int) = 4<br>
sizeof(long) = 8<br>
sizeof(std::size_t) = 8<br>
sizeof(void*) = 8<br>
sizeof(long long) = 8<br>
sizeof(float) = 4<br>
sizeof(double) = 8<br>
sizeof(long double) = 16<br>
sizeof(boost::int32_t) = 4<br>
sizeof(boost::uint32_t) = 4<br>
sizeof(wchar_t) = 4<br>
__PTRDIFF_TYPE__<br>
Py_USING_UNICODE<br>
sizeof(PY_UNICODE_TYPE) = 2<br>
BOOST_ADAPTBX_TYPE_ID_SIZE_T_EQ_UNSIGNED_LONG<br>
boost/TAG: None<br>
<a href="http://os.name/" rel="noreferrer" target="_blank"
moz-do-not-send="true">os.name</a>: posix<br>
sys.platform: darwin<br>
sys.byteorder: little<br>
platform.platform(): Darwin-17.7.0-x86_64-i386-64bit<br>
platform.architecture(): ('64bit', '')<br>
floating_point_exceptions.division_by_zero_trapped: False<br>
floating_point_exceptions.invalid_trapped: False<br>
floating_point_exceptions.overflow_trapped: False<br>
number of processors: 4<br>
Memory total: 17,179,869,184<br>
Memory free: unknown<br>
import thread: OK<br>
"hello" = ['h', 'e', 'l', 'l', 'o']<br>
u"hello" = ['h', '\x00', 'e', '\x00', 'l', '\x00', 'l', '\x00',
'o', '\x00']<br>
u"\u00C5" = ['\xc5', '\x00'] as utf-8 = ['\xc3', '\x85']<br>
LATIN CAPITAL LETTER A WITH RING ABOVE = Å
<div class="gmail-adL"><br>
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