<div dir="ltr">Hi Sharan,<div>I am getting the same error saying , 'is not a known sequence type'.</div><div>Also, please see the image enclosed below that tells how the template sequence file should look like. I tried with/without space after '>' sign and getting the same error message.</div><div><br></div><div><img src="cid:ii_kxf8neg10" alt="image.png" width="562" height="230"><br><div>Any suggestion from anyone would be appreciated.</div></div><div>Thanks,</div><div>Raja</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Dec 20, 2021 at 3:29 PM Sharan Karade <<a href="mailto:sharankarade@gmail.com" target="_blank">sharankarade@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi Raja,<div><br></div><div>Try to use the file attached here. I hope it works.</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Dec 20, 2021 at 3:27 PM Raja Dey <<a href="mailto:rddey80@gmail.com" target="_blank">rddey80@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Sorry, the error message is <div>D41-st-Trx-sequence.txt is not a known sequence type.</div><div><br></div><div>Can someone help solving this problem?</div><div><br></div><div>Best regards,</div><div>Raja</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Dec 20, 2021 at 12:02 PM Raja Dey <<a href="mailto:rddey80@gmail.com" target="_blank">rddey80@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>Hi,<br></div><div>I am getting an error with the sequence file attached. Could you please tell me what's wrong with this file? The error is enclosed below:</div><div>Starting phenix<br>on Mon Dec 20 11:45:46 2021 by rdey<br>===============================================================================<br><br>Processing files:<br>-------------------------------------------------------------------------------<br><br> Found phil, /atavium/home/jfrench/rdey/st_JF/.phenix/project_data/map_to_model_8.eff<br><br>Processing PHIL parameters:<br>-------------------------------------------------------------------------------<br><br> Adding PHIL files:<br> ------------------<br> /atavium/home/jfrench/rdey/st_JF/.phenix/project_data/map_to_model_8.eff<br><br>Processing files from PHIL:<br>-------------------------------------------------------------------------------<br><br> Found real_map, /atavium/home/jfrench/rdey/st_JF/cryosparc_P11_J139_008_volume_map_half_A.mrc<br><br> Files not used by program:<br> --------------------------<br> /atavium/home/jfrench/rdey/st_JF/D41-st-Trx-sequence.txt<br> /atavium/home/jfrench/rdey/st_JF/p11_j140_sharpened-map_box.ncs_spec<br><br>Final processed PHIL parameters:<br>-------------------------------------------------------------------------------<br> data_manager {<br> real_map_files = "/atavium/home/jfrench/rdey/st_JF/cryosparc_P11_J139_008_volume_map_half_A.mrc"<br> default_real_map = "/atavium/home/jfrench/rdey/st_JF/cryosparc_P11_J139_008_volume_map_half_A.mrc"<br> phil_files = "/atavium/home/jfrench/rdey/st_JF/.phenix/project_data/map_to_model_8.eff"<br> default_phil = "/atavium/home/jfrench/rdey/st_JF/.phenix/project_data/map_to_model_8.eff"<br> }<br> input_files {<br> map_file = /atavium/home/jfrench/rdey/st_JF/cryosparc_P11_J139_008_volume_map_half_A.mrc<br> seq_file = /atavium/home/jfrench/rdey/st_JF/D41-st-Trx-sequence.txt<br> ncs_file = /atavium/home/jfrench/rdey/st_JF/p11_j140_sharpened-map_box.ncs_spec<br> }<br> reconstruction_symmetry {<br> symmetry = """D2"""<br> }<br> control {<br> nproc = 2<br> }<br> job_title = """D41-st-Trx-19Dec21"""<br><br><br>Starting job<br>===============================================================================<br>Validating inputs<br></div><div><br></div><div><br></div><div>Thanks a lot for your time.</div><div>Regards,</div><div>Raja<div></div><div><br></div></div></div>
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Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a></blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>Sharan Karade<br>Postdoc-fellow</div><div>IBBR-UMD, <span>9600 Gudelsky Dr, </span></div><div>Rockville</div><div>Maryland 20850<br><br><br></div></div></div></div></div></div></div>
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