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    <p>Hi Oli,</p>
    <p>the code that does this is quite old and the logic behind it is
      described here:</p>
    <p><a class="moz-txt-link-freetext" href="https://phenix-online.org/phenixwebsite_static/mainsite/files/newsletter/CCN_2011_07.pdf#page=15">https://phenix-online.org/phenixwebsite_static/mainsite/files/newsletter/CCN_2011_07.pdf#page=15</a></p>
    <p>I can look into glitches in your specific example if you send me
      all inputs.</p>
    <p>Pavel<br>
    </p>
    <div class="moz-cite-prefix">On 12/20/21 12:58, Oliver Clarke wrote:<br>
    </div>
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      cite="mid:09017F0D-52F7-40DC-9670-C72297B58DC7@gmail.com">
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      <div class="">Hi,</div>
      <div class=""><br class="">
      </div>
      <div class="">While refining an X-ray structure using
        phenix.refine (v1.20-4444), I get the attached table during
        real-space refinement of coordinates. What are the criteria for
        selecting the correct weighting factor? </div>
      <div class=""><br class="">
      </div>
      <div class="">I assumed it would be the delta between R/Rfree
        and/or the clash score, but it doesn't seem to exactly match
        either in this table (and the same for other iterations of
        refinement). Is it just incorrectly writing the clash score in
        the "Accepted refinement result" line? Shouldn't this match the
        line from the selected weight (here 0.125 so should be 6.1, not
        7.1)?</div>
      <div class=""><br class="">
      </div>
      <div class="">Cheers</div>
      <div class="">Oli</div>
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        src="cid:part1.jDpvMQOE.esd9A3D3@lbl.gov" class="" width="562"
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