October 2011 - cctbxbb - phenix-online.org

flex index
by Monarin Uervirojnangkoorn 18 Oct '11

18 Oct '11

Hi, I'm using flex and 'd like to get an access to elements fall beyond/ below certain value. eg. a=[1,4,5,7,5,6,6,1] anything beyond 5 should be set to 5. (in matlab then a(a>5)=5;) if you could tell me how to do this quickly for flex, that would be great. for now i use loop and that is... pretty slow. many thanks. mona ^-^-^-^-^-^-^-^-^-^-^-^-^-^-^-^-^-^-^-^-^-^-^-^ Institute of Biochemistry, Institut für Neuro- und Bioinformatik, Graduate School for Computing in Medicine and Life Sciences University of Lübeck, Ratzeburger Allee 160 Lübeck 23538 Germany Tel: +49451-5004072 Fax: +49451-5004068

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CCTBX comprehensive overview
by Graeme.Winter＠Diamond.ac.uk 12 Oct '11

12 Oct '11

Hi Folks, Is there somewhere a comprehensive overview of what is available within cctbx? I have had a request for this from someone who may be interested in using it, but does not want to start looking until they know what is in there, without inspecting any code. Specifically, an idea of what is available from Python would hit the spot. Is there a way to generate this or does it already exist on the web? Thanks in advance, Graeme Dr. Graeme Winter Senior Software Scientist Diamond Light Source +44 1235 778091 (work) +44 7786 662784 (work mobile) -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom

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cropping out a fragment
by Monarin Uervirojnangkoorn 04 Oct '11

04 Oct '11

Hi all, I'd like to crop out a portion of a fragment (say a helix) from real_map by specifying fractional coordinates. would be nice to know if there is any specific routine for this. (oh .. & ++ option like crop only 2 angstroms from the location of the atom would be really nice). thankx Best, Mona ~.~.~.~><~.~~.~.~. Institute of Biochemistry, Institut of Neuro- and Bioinformatics Graduate School for Computing in Medicine and Life Sciences University of Lübeck, Ratzeburger Allee 160 Lübeck 23538 Germany

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