Hi Billy,
I installed cctbx in a new conda env called cctbx37:
conda create --name cctbx37 python=3.7
conda activate cctbx37
conda install -c conda-forge cctbx jupyterlab
I cannot find libtbx.run_tests_module.
I can only find libtbx.run_tests_parallel.
Best regards,
Blaine
Blaine Mooers, Ph.D.
Associate Professor
Department of Biochemistry and Molecular Biology
College of Medicine
University of Oklahoma Health Sciences Center
S.L. Young Biomedical Research Center (BRC) Rm. 466
975 NE 10th Street, BRC 466
Oklahoma City, OK 73104-5419
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Sent: Wednesday, September 23, 2020 2:00 PM
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Subject: [EXTERNAL] cctbxbb Digest, Vol 138, Issue 2
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Today's Topics:
1. cctbx now available on conda-forge (Billy Poon)
----------------------------------------------------------------------
Message: 1
Date: Wed, 23 Sep 2020 11:22:03 -0700
From: Billy Poon
To: cctbx mailing list , PHENIX user
mailing list
Subject: [cctbxbb] cctbx now available on conda-forge
Message-ID:
Content-Type: text/plain; charset="utf-8"
Hi everyone,
The conda-forge package for cctbx is now available. There are 2 packages,
"cctbx-base" includes the base code and "cctbx" which includes "cctbx-base"
and adds "wxPython", "PySide2", and "ipython". The commands for installing
cctbx into your conda environment are
conda install -c conda-forge cctbx
or
conda install -c conda-forge cctbx-base
If you want to use Jupyter Lab, you can now easily do this with
conda install -c conda-forge cctbx-base jupyterlab
jupyter lab
The existing documentation will be updated to reflect the easier
installation procedure with conda.
After installing the conda package, you can also run some of the tests (in
an empty directory) with
libtbx.run_tests_module module=libtbx module=cctbx nproc=<nproc>
I do know of a few issues that I want to fix in upcoming releases, but
please submit issues to https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_cctbx_cctbx-5Fproject&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6ECfX7MkBmhyld0TuhCVkFnEEf3aeFHIxM4znr2jCnY&s=Vn7Woa-V4O0G8CERBKscZ3z1ijUwBZ26YEU910l2nwE&e= with steps
to reproduce the error.
Thanks!
--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://urldefense.proofpoint.com/v2/url?u=https-3A__phenix-2Donline.org&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6ECfX7MkBmhyld0TuhCVkFnEEf3aeFHIxM4znr2jCnY&s=0jI2Zk7EtFc6O96Dn_A4UuNMDiOZ1tNdA0jieZF0nCA&e=
