Eike, Possibly issuing the command libtbx.configure xfel followed by changing to the build directory and make would help sort this out. Nick Nicholas K. Sauter, Ph. D. Computer Staff Scientist, Molecular Biophysics and Integrated Bioimaging Division Lawrence Berkeley National Laboratory 1 Cyclotron Rd., Bldg. 33R0345 Berkeley, CA 94720 (510) 486-5713 On Tue, Apr 5, 2016 at 1:55 AM, Schulz, Eike-Christian < [email protected]> wrote:
Dear all,
I am new to serial crystallography and trying to process still images from a synchrotron source (Pilatus 6M detector) using CCTBX. Obviously the process is not glitch-free and I was hoping to get some help here.
The indexing routine starts, indexes the images correctly and and produces a log file but no .pickle files are created in the results/000/ directory as described in the wiki entry.
I assume that there is a software module that is not properly loaded during the process since I get following error message during indexing:
---------BEGIN Integrate one frame 75 warsaw0048_00075.pickle EFFECTIVE TILING 0 0 2282 2282 Indexing error: No module named cxi_user
Is there a way to find out if all dependencies are matched ? I suppose CCTBX.XFEL depends on some (specific) python libraries … ?
Or am I completely wrong and the error is something different ?
With best regards
Eike
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