Thanks Rob. Seems like a test for this is difficult.

Cheers

Nigel

---
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty@LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Wed, Jun 28, 2017 at 7:06 AM, R.D. Oeffner <rdo20@cam.ac.uk> wrote:

hi,

It would appear that the URL in cctbx_project\iotbx\pdb\fetch.py for fetching fasta files has been changed by RCSB. So fetch.py therefore downloads garbage when trying to download a fasta file. The correct URL is not documented by RCSB but can be inferred from the RCSB web site when downloading a fasta file. I've updated the URL in fetch.py accordingly.

 

Rob

 

--

Robert Oeffner, Ph.D.
Research Associate, The Read Group
Department of Haematology, 
Cambridge Institute for Medical Research 
University of Cambridge 
Cambridge Biomedical Campus 
Wellcome Trust/MRC Building 
Hills Road 
Cambridge CB2 0XY

www.cimr.cam.ac.uk/investigators/read/index.html
tel: +44(0)1223 763234


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