Eike,

Possibly issuing the command 

libtbx.configure xfel

followed by changing to the build directory and 

make

would help sort this out.

Nick

Nicholas K. Sauter, Ph. D.
Computer Staff Scientist, Molecular Biophysics and Integrated Bioimaging Division

Lawrence Berkeley National Laboratory
1 Cyclotron Rd., Bldg. 33R0345
Berkeley, CA 94720
(510) 486-5713

On Tue, Apr 5, 2016 at 1:55 AM, Schulz, Eike-Christian <[email protected]> wrote:

Dear all,

I am new to serial crystallography and trying to process still images from a synchrotron source (Pilatus 6M detector) using CCTBX. Obviously the process is not glitch-free and I was hoping to get some help here.

The indexing routine starts, indexes the images correctly and and produces a log file but no .pickle files are created in the results/000/ directory as described in the wiki entry.

I assume that there is a software module that is not properly loaded during the process since I get following error message during indexing:

---------BEGIN Integrate one frame 75 warsaw0048_00075.pickle
EFFECTIVE TILING 0 0 2282 2282
Indexing error: No module named cxi_user


Is there a way to find out if all dependencies are matched ? I suppose CCTBX.XFEL depends on some (specific) python libraries … ?

Or am I completely wrong and the error is something different ?

With best regards

Eike




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