Re: [cctbxbb] new cctbx-plus installers

Hi fellows, One detail with the new installer that I will like to share: I am giving it a try in a RHEL6 working station without root permission, so I modified the "/cctbx-installer-2014_09_21_2205/lib/libtbx/auto_build/install_distribution.py" file and changed one line: destination = "/usr/local" with the new path: destination = "/scratch/cctbx-new" The installation went pretty well until it got stuck trying MatplotLib, I don't think it got stuck because of the little hack I did, but still worth commenting and chowing the full console output. Anybody can have a look? Thanks, Luiso. ./install --makedirs ========================================================================== CCTBX Installation version: 2014_09_21_2205 machine type: intel-linux-2.6-x86_64 OS version: 2.6.32-431.20.5.el6.x86_64 user shell: /bin/bash destination: /scratch/cctbx-new # of processors: 4 ========================================================================= No binary bundles found for intel-linux-2.6-x86_64 Okay, this must be the source-only installer. CCTBX installation target directory set to: /scratch/cctbx-new/cctbx-2014_09_21_2205 CCTBX installation source directory set to: /scratch/cctbx-installer-2014_09_21_2205 CCTBX installation build directory set to: /scratch/cctbx-new/cctbx-2014_09_21_2205/build CCTBX temporary build directory set to: /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201 **************************************************************************** Automated CCTBX dependencies build script report problems to [email protected] **************************************************************************** Setting up directories... *** Building dependencies first *** -------------------------------------------------------------------------------- Installing Python... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/Python_install_log getting package Python-2.7.6_cci.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/Python-2.7.6_cci.tar.gz verifying Python installation... OK -------------------------------------------------------------------------------- Installing numpy... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/numpy_install_log getting package numpy-1.8.1.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/numpy-1.8.1.tar.gz verifying numpy installation... OK -------------------------------------------------------------------------------- Installing BioPython... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/BioPython_install_log getting package biopython-1.64.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/biopython-1.64.tar.gz verifying BioPython installation... OK -------------------------------------------------------------------------------- Installing Freetype... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/Freetype_install_log getting package freetype-2.4.2.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/freetype-2.4.2.tar.gz -------------------------------------------------------------------------------- Installing Imaging... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/Imaging_install_log getting package Imaging-1.1.7.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/Imaging-1.1.7.tar.gz verifying Imaging installation... OK -------------------------------------------------------------------------------- Installing reportlab... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/reportlab_install_log getting package reportlab-2.6.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/reportlab-2.6.tar.gz verifying reportlab installation... OK -------------------------------------------------------------------------------- Installing HDF5... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/HDF5_install_log getting package hdf5-1.8.8.tar.bz2... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/hdf5-1.8.8.tar.bz2 getting package h5py-2.0.1-edit.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/h5py-2.0.1-edit.tar.gz verifying h5py installation... OK -------------------------------------------------------------------------------- Installing libpng... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/libpng_install_log getting package libpng-1.2.32.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/libpng-1.2.32.tar.gz -------------------------------------------------------------------------------- Installing gettext... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/gettext_install_log getting package gettext-0.18.2.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/gettext-0.18.2.tar.gz -------------------------------------------------------------------------------- Installing glib... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/glib_install_log getting package glib-2.12.11.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/glib-2.12.11.tar.gz -------------------------------------------------------------------------------- Installing expat... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/expat_install_log getting package expat-1.95.8.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/expat-1.95.8.tar.gz -------------------------------------------------------------------------------- Installing fontconfig... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/fontconfig_install_log getting package fontconfig-2.3.95.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/fontconfig-2.3.95.tar.gz -------------------------------------------------------------------------------- Installing render... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/render_install_log getting package render-0.8.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/render-0.8.tar.gz -------------------------------------------------------------------------------- Installing Xrender... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/Xrender_install_log getting package xrender-0.8.3.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/xrender-0.8.3.tar.gz -------------------------------------------------------------------------------- Installing Xft... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/Xft_install_log getting package xft-2.1.2.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/xft-2.1.2.tar.gz -------------------------------------------------------------------------------- Installing pixman... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/pixman_install_log getting package pixman-0.19.2.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/pixman-0.19.2.tar.gz -------------------------------------------------------------------------------- Installing cairo... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/cairo_install_log getting package cairo-1.8.10.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/cairo-1.8.10.tar.gz -------------------------------------------------------------------------------- Installing pango... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/pango_install_log getting package pango-1.16.1.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/pango-1.16.1.tar.gz -------------------------------------------------------------------------------- Installing atk... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/atk_install_log getting package atk-1.9.1.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/atk-1.9.1.tar.gz -------------------------------------------------------------------------------- Installing tiff... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/tiff_install_log getting package tiff-v3.6.1.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/tiff-v3.6.1.tar.gz -------------------------------------------------------------------------------- Installing gtk+... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/gtk+_install_log getting package gtk+-2.10.11.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/gtk+-2.10.11.tar.gz -------------------------------------------------------------------------------- Installing gtk-engine... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/gtk-engine_install_log getting package clearlooks-0.5.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/clearlooks-0.5.tar.gz -------------------------------------------------------------------------------- Installing fonts... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/fonts_install_log getting package fonts.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/fonts.tar.gz -------------------------------------------------------------------------------- Installing wxPython... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/wxPython_install_log getting package wxPython-src-2.8.12.1.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/wxPython-src-2.8.12.1.tar.gz building wxWidgets with options: --disable-mediactrl --with-opengl --prefix="/scratch/cctbx-new/cctbx-2014_09_21_2205/base" --enable-optimize --disable-debugreport --with-gtk --with-gtk-prefix="/scratch/cctbx-new/cctbx-2014_09_21_2205/base" --with-gtk-exec-prefix="/scratch/cctbx-new/cctbx-2014_09_21_2205/base/lib" --enable-graphics_ctx building wxPython with options: BUILD_GLCANVAS=1 BUILD_STC=0 BUILD_GIZMOS=0 BUILD_DLLWIDGET=0 BUILD_OGL=0 UNICODE=0 verifying wxPython installation... OK -------------------------------------------------------------------------------- Installing PyRTF... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/PyRTF_install_log getting package PyRTF-0.45.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/PyRTF-0.45.tar.gz verifying PyRTF installation... OK -------------------------------------------------------------------------------- Installing Matplotlib... log file is /scratch/cctbx-installer-2014_09_21_2205/install_tmp/intel-linux-2.6-x86_64/ws201/Matplotlib_install_log getting package matplotlib-1.3.1.tar.gz... using /scratch/cctbx-installer-2014_09_21_2205/dependencies/matplotlib-1.3.1.tar.gz Traceback (most recent call last): File "./bin/install.py", line 34, in <module> installer(sys.argv[1:]) File "/scratch/cctbx-installer-2014_09_21_2205/lib/libtbx/auto_build/install_distribution.py", line 127, in __init__ self.install_from_source() File "/scratch/cctbx-installer-2014_09_21_2205/lib/libtbx/auto_build/install_distribution.py", line 380, in install_from_source log=out) File "/scratch/cctbx-installer-2014_09_21_2205/lib/libtbx/auto_build/install_base_packages.py", line 113, in __init__ self.build_cctbx_dependencies() File "/scratch/cctbx-installer-2014_09_21_2205/lib/libtbx/auto_build/install_base_packages.py", line 170, in build_cctbx_dependencies self.build_misc() File "/scratch/cctbx-installer-2014_09_21_2205/lib/libtbx/auto_build/install_base_packages.py", line 646, in build_misc confirm_import_module="matplotlib") File "/scratch/cctbx-installer-2014_09_21_2205/lib/libtbx/auto_build/install_base_packages.py", line 337, in build_python_module_simple log=pkg_log) File "/scratch/cctbx-installer-2014_09_21_2205/lib/libtbx/auto_build/install_base_packages.py", line 192, in call return call(args, log=log) File "/scratch/cctbx-installer-2014_09_21_2205/lib/libtbx/auto_build/installer_utils.py", line 53, in call raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc)) RuntimeError: Call to '/scratch/cctbx-new/cctbx-2014_09_21_2205/base/bin/python setup.py build ' failed with exit code 1 ________________________________ From: Nathaniel Echols [[email protected]] Sent: 09 September 2014 19:46 To: cctbx mailing list Subject: [cctbxbb] new cctbx-plus installers Hi all-- We now have improved installers for CCTBX with all optional third-party dependencies, including numpy, wxPython, and matplotlib; these are basically just a simplified Phenix installer (minus anything that isn't open-source, obviously). For anyone doing visualization these are probably preferable to the default packages. More useful for doing active development is that since these include the pre-build Python, if you are working directly with the CCTBX sources you can bootstrap from these packages. Yesterday's build is here: http://cci.lbl.gov/cctbx_build/plus_bundles/2014_09_08_0005/ and in general the latest version can be obtained here: http://cci.lbl.gov/cctbx_build/plus_bundles/current although today's build isn't finished yet. The next build will also incorporate IPython. I still need to fix the download page so these are listed alongside the old bundles. Once this is done we'll probably declare an official "release". -Nat -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. 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