Re: [cctbxbb] Phil (dumb) question

Thanks Nick, I also realised this on the way home from work! All sorted now. Best wishes, Graeme On 14 Jan 2013, at 16:39, Nicholas Sauter wrote:

Graeme,

The problem in your example is that the fetch() function call returns a new phil object; it does not modify its own class instance. Therefore you can get what you want by calling working_phil.fetch(parse(more)).show().

Nick

On Mon, Jan 14, 2013 at 8:15 AM, wrote:

...

Hi Folks,

I have a toy example where I should be overriding Phil defaults:

phil_defaults = ''' resolutionizer { rmerge = 0.0 .type = float completeness = 0.0 .type = float isigma = 1.0 .type = float misigma = 2.0 .type = float bins = 100 .type = int } '''

more = ''' resolutionizer { isigma = 2.0 misigma = 4.0 } '''

from libtbx.phil import parse

working_phil = parse(phil_defaults) working_phil.fetch(parse(more)) working_phil.show()

but it seems I am not:

Graemes-MacBook-Pro:scale graeme$ cctbx.python toy.py resolutionizer { rmerge = 0.0 completeness = 0.0 isigma = 1.0 misigma = 2.0 bins = 100 }

Am I doing something dumb? I hope so as I really cannot find my error.

Thanks,

Graeme

-- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom

_______________________________________________ cctbxbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/cctbxbb

-- Nicholas K. Sauter, Ph. D. Computer Staff Scientist, Physical Biosciences Division Lawrence Berkeley National Laboratory 1 Cyclotron Rd., Bldg. 64R0121 Berkeley, CA 94720-8118 (510) 486-5713

-- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom