Re: [cctbxbb] jupyter notebook

Hello, I was able to get Jupyter to work generally following these instructions: https://github.com/ExaFEL/exafel_project/tree/master/jupyter I've adapted those instructions to use a cctbx standalone binary build. I did this on a linux centos 6 machine on which I had remote access and I also had conda installed. Given an empty directory $cctbx and that the latest dev version is 1725: - cd $cctbx - wget http://cci.lbl.gov/cctbx_build/dev-1725/cctbx-installer-dev-1725-intel-linux... - tar -xvf cctbx-installer-dev-1725-intel-linux-2.6-x86_64-centos6.tar.gz - cd cctbx-installer-dev-1725-intel-linux-2.6-x86_64-centos6 - ./install --prefix=$cctbx - cd ../cctbx-dev-1725/ - conda activate `pwd`/conda_base - conda install jupyter - source cctbx_env.sh - libtbx.ipython notebook --no-browser --port=8889 - Note the token produced. Then on my local machine: - ssh -N -f -L localhost:8888:localhost:8889 @ - Open localhost:8888 in my browser and enter the token. - Create a new notebook and test with the line import cctbx Let me know if it doesn't work :) -Aaron On Sat, Mar 30, 2019 at 6:27 AM wtempel wrote:

Hi all, how does one configure, and run inside a jupyter notebook, a cctbx-enabled kernel, beginning with a downloaded [cctbx build]( http://cci.lbl.gov/cctbx_build/)? [This page]( https://medium.com/@sljack1992/making-a-custom-ipython-notebook-kernel-c59e4...) seems to describe the first part, but may no longer apply to more recent cctbx builds. Thanks. Wolfram Tempel _______________________________________________ cctbxbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/cctbxbb