Dear David

There is some weirdness to do with how Ubuntu lay out their X-window stuff, but in this case I have a feeling the problem is more to do with it having it’s own libtool – when I was trying to make the bootstrap installer work on Ubuntu 14.4r2 I had to add the following hack:

import os

import platform

# Ubuntu & Xrender - libtool is broken - replace with system one if

# installed...

if 'xrender' in os.path.split(os.getcwd())[-1] and \

'Ubuntu' in platform.platform() and os.path.exists('libtool'):

if os.path.exists(os.path.join('/', 'usr', 'bin', 'libtool')):

self.log.write('Removing xrender libtool; replace with system\n')

os.remove('libtool')

os.symlink(os.path.join('/', 'usr', 'bin', 'libtool'), 'libtool')

else:

self.log.write('Cannot removing xrender libtool; not installed\n')

return

Please try doing the same by hand & see if it makes the problem go away.

You may find an alternative solution is to install the dependencies on the machine through apt-get & install cctbx using the system Python

Overall this may be less painful…

best wishes Graeme

From: [email protected] [mailto:[email protected]] On Behalf Of Dave Lodowski
Sent: 16 March 2015 15:57
To: [email protected]
Subject: [cctbxbb] compilation issues

Hi, sorry if this is a repeat, but an email sent to the [email protected] bounced back to me. We are attempting to install the DIALS package and CCTBX is required for compilation. During compilation of CCTBX, Xrender fails to find the X windows server. OS is Ubuntu LTS 12.04.5

text from console upon failure:

Installing Xrender...

log file is /home/dave/cctbx/build/base_tmp/Xrender_install_log

getting package xrender-0.8.3.tar.gz...

downloading from http://cci.lbl.gov/cctbx_dependencies : local copy is current

using ./xrender-0.8.3.tar.gz (cached)

installing xrender-0.8.3.tar.gz...

Traceback (most recent call last):

File "../auto_build/install", line 9, in <module>

install_base_packages.installer(args=sys.argv, log=sys.stdout)

File "../auto_build/install_base_packages.py", line 161, in __init__

self.build_dependencies(packages=packages)

File "../auto_build/install_base_packages.py", line 505, in build_dependencies

getattr(self, 'build_%s'%i)()

File "../auto_build/install_base_packages.py", line 781, in build_render

self.build_compiled_package_simple(pkg_name=pkg, pkg_name_label=name)

File "../auto_build/install_base_packages.py", line 407, in build_compiled_package_simple

log=pkg_log)

File "../auto_build/install_base_packages.py", line 392, in configure_and_build

self.call("./configure %s" % " ".join(list(config_args)), log=log)

File "../auto_build/install_base_packages.py", line 243, in call

return call(args, log=log, verbose=self.verbose, **kwargs)

File "../auto_build/installer_utils.py", line 71, in call

raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))

RuntimeError: Call to './configure --prefix="/home/dave/cctbx/build/base"' failed with exit code 1

Log file indicates everything fine till X is required then :

checking for X... no

configure: error: X is required, but it was either disabled or not found.

any suggestions as to how to proceed would be appreciated

thanks,

--David Lodowski

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