Re: [cctbxbb] cctbxbb Digest, Vol 105, Issue 3

Hi Gianluca , You might try getting the sources for 2.7 from here: https://gist.github.com/0x414A/8b64178e69d9f8331938 Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology, College of Medicine University of Oklahoma Health Sciences Center 975 NE 10th Street, BRC 466 Oklahoma City, OK 73104-5419 Faculty webpage X-ray lab (LBSF) COBRE in Structural Biology SSRL UEC Facebook Page SSRL UEC SSRL SAC LCLS UEC EasyPyMOL Molecular Graphics Small Angle Scattering office: (405) 271-8300 lab: (405) 271-8313 e-mail: [email protected] ________________________________________ From: [email protected] [[email protected]] on behalf of [email protected] [[email protected]] Sent: Friday, December 08, 2017 2:00 PM To: [email protected] Subject: cctbxbb Digest, Vol 105, Issue 3 Send cctbxbb mailing list submissions to [email protected] To subscribe or unsubscribe via the World Wide Web, visit https://urldefense.proofpoint.com/v2/url?u=http-3A__phenix-2Donline.org_mailman_listinfo_cctbxbb&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=GwdNPY7ypHlodjN8ehNayxUtD5BdVtwq8HHjGGTGlc4&s=JYMUbXhgIvB9zetty4-LwQ1pm3KUahYmGDgtXhgpEhw&e= or, via email, send a message with subject or body 'help' to [email protected] You can reach the person managing the list at [email protected] When replying, please edit your Subject line so it is more specific than "Re: Contents of cctbxbb digest..." Today's Topics: 1. Importing PyQt4 in litbx.python (Gianluca SANTONI) 2. Re: Importing PyQt4 in litbx.python ([email protected]) 3. Re: Importing PyQt4 in litbx.python (Gianluca SANTONI) ---------------------------------------------------------------------- Message: 1 Date: Fri, 8 Dec 2017 13:18:13 +0100 From: Gianluca SANTONI To: cctbx mailing list Subject: [cctbxbb] Importing PyQt4 in litbx.python Message-ID: <[email protected]> Content-Type: text/plain; charset=utf-8; format=flowed Dear all, I'm having some troubles recently in importing pyqt4 in libtbx.python under Debian8. It used to work with a previous build compiled from the sources, but I don't find a reasonable way to make it work from the bootstrap installation. More details: 1) If I do in libtbx.python sys.path.append('/usr/lib/python2.7/dist-packages/') and "from PyQt4 import QtCore", I get an unidentified symbol: PyUnicodeUCS4_AsLatin1String 2) If I try to compile cctbx as I did in the past "python ../libtbx/configure.py cctbx" no make file is produced. Maybe I'm missing something Thanks everybody for your help. Gian -- Gianluca Santoni, PhD ESRF structural biology group 71 avenue des Martyrs 38027 Grenoble cedex (France) ------------------------------ Message: 2 Date: Fri, 8 Dec 2017 12:40:13 +0000 From: To: Subject: Re: [cctbxbb] Importing PyQt4 in litbx.python Message-ID: Content-Type: text/plain; charset=utf-8 Hi, There is an issue open on UCS4 which is somewhat related: https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_cctbx_cctbx-5Fproject_issues_60&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=GwdNPY7ypHlodjN8ehNayxUtD5BdVtwq8HHjGGTGlc4&s=6LpNkcGx8bq7tAB89CLg2QKT2RSt2pTELiRC1u5Yx7I&e= We currently don't use UCS4, and your system pyqt4 does. You would have to install (and potentially, compile) it for the cctbx python directly. A 3 minute research from my mobile phone suggests that you might be able to download the sources as tar.gz files and then do something along the lines of cctbx.python -m pip install SIP cctbx.python -m pip install pyqt-source.tar.gz but this is untested, and I haven't used pyqt before. -Markus On 8 Dec 2017 12:19, Gianluca SANTONI wrote: Dear all, I'm having some troubles recently in importing pyqt4 in libtbx.python under Debian8. It used to work with a previous build compiled from the sources, but I don't find a reasonable way to make it work from the bootstrap installation. More details: 1) If I do in libtbx.python sys.path.append('/usr/lib/python2.7/dist-packages/') and "from PyQt4 import QtCore", I get an unidentified symbol: PyUnicodeUCS4_AsLatin1String 2) If I try to compile cctbx as I did in the past "python ../libtbx/configure.py cctbx" no make file is produced. Maybe I'm missing something Thanks everybody for your help. Gian -- Gianluca Santoni, PhD ESRF structural biology group 71 avenue des Martyrs 38027 Grenoble cedex (France) _______________________________________________ cctbxbb mailing list [email protected] https://urldefense.proofpoint.com/v2/url?u=http-3A__phenix-2Donline.org_mailman_listinfo_cctbxbb&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=GwdNPY7ypHlodjN8ehNayxUtD5BdVtwq8HHjGGTGlc4&s=JYMUbXhgIvB9zetty4-LwQ1pm3KUahYmGDgtXhgpEhw&e= -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom ------------------------------ Message: 3 Date: Fri, 8 Dec 2017 14:20:26 +0100 From: Gianluca SANTONI To: [email protected] Subject: Re: [cctbxbb] Importing PyQt4 in litbx.python Message-ID: <[email protected]> Content-Type: text/plain; charset=utf-8; format=flowed Hi Markus, I could fix everyting by compiling both libraries from source with cctbx.python. Hope this helps others with similar problem too. cctbx.python -m pip install SIP cctbx.python -m pip install pyqt-source.tar.gz did not work. There is actually no PyPi package for sip in python2.7 Cheers Gian Gianluca Santoni, PhD ESRF structural biology group 71 avenue des Martyrs 38027 Grenoble cedex (France) On 08/12/2017 13:40, [email protected] wrote:

Hi,

There is an issue open on UCS4 which is somewhat related: https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_cctbx_cctbx-5Fproject_issues_60&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=GwdNPY7ypHlodjN8ehNayxUtD5BdVtwq8HHjGGTGlc4&s=6LpNkcGx8bq7tAB89CLg2QKT2RSt2pTELiRC1u5Yx7I&e=

We currently don't use UCS4, and your system pyqt4 does. You would have to install (and potentially, compile) it for the cctbx python directly.

A 3 minute research from my mobile phone suggests that you might be able to download the sources as tar.gz files and then do something along the lines of

cctbx.python -m pip install SIP cctbx.python -m pip install pyqt-source.tar.gz

but this is untested, and I haven't used pyqt before.

-Markus

On 8 Dec 2017 12:19, Gianluca SANTONI wrote: Dear all, I'm having some troubles recently in importing pyqt4 in libtbx.python under Debian8. It used to work with a previous build compiled from the sources, but I don't find a reasonable way to make it work from the bootstrap installation.

More details:

1) If I do in libtbx.python sys.path.append('/usr/lib/python2.7/dist-packages/') and "from PyQt4 import QtCore", I get an

unidentified symbol: PyUnicodeUCS4_AsLatin1String

2) If I try to compile cctbx as I did in the past "python ../libtbx/configure.py cctbx" no make file is produced. Maybe I'm missing something

Thanks everybody for your help. Gian

-- Gianluca Santoni, PhD ESRF structural biology group 71 avenue des Martyrs 38027 Grenoble cedex (France)

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