Cool,

thanks a lot Pavel,

I’ll try to understand that a bit further. From what I can see, I could very well also read the A and B.ccp4 from an outside file and use the same subsequent code to run the super positioning, right?

Thanks again, that’s really helpful.

Peter

On 2 Jul 2019, at 21:09, Pavel Afonine <[email protected]> wrote:

Hi Peter,

I'm attaching example code that does it.

Pavel

On 7/2/19 00:13, Peter Schmidtke wrote:
Hi all,
 
I'm trying to find sample code or documentaiton on how to do the following: 
 
I have a density map and a rotation/translation matrix (numpy matrix) and I'd like to apply it to the density map at hand and write the transformed map again. I know that phenix allows to superimpose structures and underlying densities but I couldn't find how to do this programatically with cctbx. 
 
Thanks in advance for your help
 
Peter Schmidtke


<pheA.pdb><pheB.pdb><run.py>