Hi Ralf, Thanks for getting back so fast - I get these: Graemes-MacBook-Pro:build graeme$ c++ --version Apple clang version 3.1 (tags/Apple/clang-318.0.45) (based on LLVM 3.1svn) Target: x86_64-apple-darwin11.3.0 Thread model: posix Graemes-MacBook-Pro:build graeme$ cat /Users/graeme/svn/cctbx/sources/boost/TAG 73458 Additionally Graemes-MacBook-Pro:build graeme$ which c++ /usr/bin/c++ Graemes-MacBook-Pro:build graeme$ g++ --version i686-apple-darwin11-llvm-g++-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.9.00) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. X-code from app store last night... Best wishes, Graeme ________________________________ From: [email protected] [[email protected]] on behalf of Ralf Grosse-Kunstleve [[email protected]] Sent: 22 February 2012 08:51 To: cctbx mailing list Subject: Re: [cctbxbb] Build on OS X Lion Hi Graeme, What do you get from c++ --version ? On my Lion laptop I get i686-apple-darwin11-llvm-g++-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00) Also, what do you get from cat /Users/graeme/svn/cctbx/sources/boost/TAG ? Ralf On Wed, Feb 22, 2012 at 12:28 AM, mailto:[email protected]> wrote: Hi Folks, Just ran the cctbx_svn_getting_started script to do a build on a new lion system and I got this error - had anyone else got this working correctly on such a system? Template definition not found is a little beyond my usual C++ debugging skills. Many thanks, Graeme c++ -o scitbx/math/boost_python/tensor_rank_2.o -c -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -DBOOST_PYTHON_MAX_BASES=2 -I/Users/graeme/svn/cctbx/sources/boost -fPIC -fno-strict-aliasing -w -no-cpp-precomp -DNDEBUG -O3 -ffast-math -Iinclude -I/Users/graeme/svn/cctbx/sources/include -I/Users/graeme/svn/cctbx/sources/cctbx_project/include -I/Users/graeme/svn/cctbx/sources/cctbx_project -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/tensor_rank_2.cpp clang: warning: argument unused during compilation: '-no-cpp-precomp' In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3: In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9: In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17: /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:339:16: error: call to function 'bessel_j_small_z_series' that is neither visible in the template definition nor found by argument-dependent lookup Jv = bessel_j_small_z_series(v, x, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:119:4: note: in instantiation of function template specialization 'boost::math::detail::bessel_jy >' requested here bessel_jy(v, x, &j, &y, need_j, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:165:9: note: in instantiation of function template specialization 'boost::math::detail::cyl_bessel_j_imp >' requested here * cyl_bessel_j_imp(T(T(n)+T(0.5f)), x, bessel_no_int_tag(), pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:449:65: note: in instantiation of function template specialization 'boost::math::detail::sph_bessel_j_imp >' requested here return policies::checked_narrowing_cast(detail:... ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:455:11: note: in instantiation of function template specialization 'boost::math::sph_bessel >' requested here return sph_bessel(v, x, policies::policy<>()); ^ /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:291:13: note: in instantiation of function template specialization 'boost::math::sph_bessel<double>' requested here return( sph_bessel(l,x) ); ^ /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:363:9: note: in instantiation of function template specialization 'scitbx::math::bessel::spherical_bessel<double>' requested here bessel::spherical_bessel); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:47:10: note: 'bessel_j_small_z_series' should be declared prior to the call site or in namespace 'boost::math::policies' inline T bessel_j_small_z_series(T v, T x, const Policy& pol) ^ In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3: In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9: In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17: /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:346:16: error: call to function 'bessel_y_small_z_series' that is neither visible in the template definition nor found by argument-dependent lookup Yv = bessel_y_small_z_series(v, x, &Yv_scale, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:139:10: note: 'bessel_y_small_z_series' should be declared prior to the call site or in namespace 'boost::math::policies' inline T bessel_y_small_z_series(T v, T x, T* pscale, const Policy& pol) ^ In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3: In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9: In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17: /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:356:16: error: call to function 'bessel_j_small_z_series' that is neither visible in the template definition nor found by argument-dependent lookup Jv = bessel_j_small_z_series(v, x, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:47:10: note: 'bessel_j_small_z_series' should be declared prior to the call site or in namespace 'boost::math::policies' inline T bessel_j_small_z_series(T v, T x, const Policy& pol) ^ In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3: In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9: In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17: /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:363:16: error: call to function 'bessel_yn_small_z' that is neither visible in the template definition nor found by argument-dependent lookup Yv = bessel_yn_small_z(n, x, &Yv_scale, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:213:3: note: 'bessel_yn_small_z' should be declared prior to the call site or in namespace 'boost::math::policies' T bessel_yn_small_z(int n, T z, T* scale, const Policy& pol) ^ 4 errors generated. c++ -o scitbx/math/boost_python/chebyshev.o -c -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -DBOOST_PYTHON_MAX_BASES=2 -I/Users/graeme/svn/cctbx/sources/boost -fPIC -fno-strict-aliasing -w -no-cpp-precomp -DNDEBUG -O3 -ffast-math -Iinclude -I/Users/graeme/svn/cctbx/sources/include -I/Users/graeme/svn/cctbx/sources/cctbx_project/include -I/Users/graeme/svn/cctbx/sources/cctbx_project -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/chebyshev.cpp clang: warning: argument unused during compilation: '-no-cpp-precomp' scons: *** [scitbx/math/boost_python/math_ext.o] Error 1 scons: building terminated because of errors. usr+sys time: 23.10 seconds wall clock time: 3 minutes 39.02 seconds (219.02 seconds total) -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom _______________________________________________ cctbxbb mailing list [email protected]mailto:[email protected] http://phenix-online.org/mailman/listinfo/cctbxbb -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom

Hi Ralf, That (--compiler=gcc) sorted it, many thanks! Graeme From: [email protected] [mailto:[email protected]] On Behalf Of Ralf Grosse-Kunstleve Sent: 22 February 2012 09:29 To: cctbx mailing list Subject: Re: [cctbxbb] Build on OS X Lion Hi Graeme, Could you try with .../libtbx/configure.py --compiler=gcc ... and if that also doesn't work --compiler=gcc-4.2 ? Ralf On Wed, Feb 22, 2012 at 12:56 AM, mailto:[email protected]> wrote: Hi Ralf, Thanks for getting back so fast - I get these: Graemes-MacBook-Pro:build graeme$ c++ --version Apple clang version 3.1 (tags/Apple/clang-318.0.45) (based on LLVM 3.1svn) Target: x86_64-apple-darwin11.3.0 Thread model: posix Graemes-MacBook-Pro:build graeme$ cat /Users/graeme/svn/cctbx/sources/boost/TAG 73458 Additionally Graemes-MacBook-Pro:build graeme$ which c++ /usr/bin/c++ Graemes-MacBook-Pro:build graeme$ g++ --version i686-apple-darwin11-llvm-g++-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.9.00) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. X-code from app store last night... Best wishes, Graeme ________________________________ From: [email protected]mailto:[email protected] [[email protected]mailto:[email protected]] on behalf of Ralf Grosse-Kunstleve [[email protected]mailto:[email protected]] Sent: 22 February 2012 08:51 To: cctbx mailing list Subject: Re: [cctbxbb] Build on OS X Lion Hi Graeme, What do you get from c++ --version ? On my Lion laptop I get i686-apple-darwin11-llvm-g++-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00) Also, what do you get from cat /Users/graeme/svn/cctbx/sources/boost/TAG ? Ralf On Wed, Feb 22, 2012 at 12:28 AM, mailto:[email protected]mailto:[email protected]>> wrote: Hi Folks, Just ran the cctbx_svn_getting_started script to do a build on a new lion system and I got this error - had anyone else got this working correctly on such a system? Template definition not found is a little beyond my usual C++ debugging skills. Many thanks, Graeme c++ -o scitbx/math/boost_python/tensor_rank_2.o -c -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -DBOOST_PYTHON_MAX_BASES=2 -I/Users/graeme/svn/cctbx/sources/boost -fPIC -fno-strict-aliasing -w -no-cpp-precomp -DNDEBUG -O3 -ffast-math -Iinclude -I/Users/graeme/svn/cctbx/sources/include -I/Users/graeme/svn/cctbx/sources/cctbx_project/include -I/Users/graeme/svn/cctbx/sources/cctbx_project -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/tensor_rank_2.cpp clang: warning: argument unused during compilation: '-no-cpp-precomp' In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3: In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9: In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17: /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:339:16: error: call to function 'bessel_j_small_z_series' that is neither visible in the template definition nor found by argument-dependent lookup Jv = bessel_j_small_z_series(v, x, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:119:4: note: in instantiation of function template specialization 'boost::math::detail::bessel_jy >' requested here bessel_jy(v, x, &j, &y, need_j, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:165:9: note: in instantiation of function template specialization 'boost::math::detail::cyl_bessel_j_imp >' requested here * cyl_bessel_j_imp(T(T(n)+T(0.5f)), x, bessel_no_int_tag(), pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:449:65: note: in instantiation of function template specialization 'boost::math::detail::sph_bessel_j_imp >' requested here return policies::checked_narrowing_cast(detail:... ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:455:11: note: in instantiation of function template specialization 'boost::math::sph_bessel >' requested here return sph_bessel(v, x, policies::policy<>()); ^ /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:291:13: note: in instantiation of function template specialization 'boost::math::sph_bessel<double>' requested here return( sph_bessel(l,x) ); ^ /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:363:9: note: in instantiation of function template specialization 'scitbx::math::bessel::spherical_bessel<double>' requested here bessel::spherical_bessel); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:47:10: note: 'bessel_j_small_z_series' should be declared prior to the call site or in namespace 'boost::math::policies' inline T bessel_j_small_z_series(T v, T x, const Policy& pol) ^ In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3: In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9: In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17: /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:346:16: error: call to function 'bessel_y_small_z_series' that is neither visible in the template definition nor found by argument-dependent lookup Yv = bessel_y_small_z_series(v, x, &Yv_scale, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:139:10: note: 'bessel_y_small_z_series' should be declared prior to the call site or in namespace 'boost::math::policies' inline T bessel_y_small_z_series(T v, T x, T* pscale, const Policy& pol) ^ In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3: In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9: In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17: /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:356:16: error: call to function 'bessel_j_small_z_series' that is neither visible in the template definition nor found by argument-dependent lookup Jv = bessel_j_small_z_series(v, x, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:47:10: note: 'bessel_j_small_z_series' should be declared prior to the call site or in namespace 'boost::math::policies' inline T bessel_j_small_z_series(T v, T x, const Policy& pol) ^ In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3: In file included from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9: In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17: /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:363:16: error: call to function 'bessel_yn_small_z' that is neither visible in the template definition nor found by argument-dependent lookup Yv = bessel_yn_small_z(n, x, &Yv_scale, pol); ^ /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:213:3: note: 'bessel_yn_small_z' should be declared prior to the call site or in namespace 'boost::math::policies' T bessel_yn_small_z(int n, T z, T* scale, const Policy& pol) ^ 4 errors generated. c++ -o scitbx/math/boost_python/chebyshev.o -c -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -DBOOST_PYTHON_MAX_BASES=2 -I/Users/graeme/svn/cctbx/sources/boost -fPIC -fno-strict-aliasing -w -no-cpp-precomp -DNDEBUG -O3 -ffast-math -Iinclude -I/Users/graeme/svn/cctbx/sources/include -I/Users/graeme/svn/cctbx/sources/cctbx_project/include -I/Users/graeme/svn/cctbx/sources/cctbx_project -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/chebyshev.cpp clang: warning: argument unused during compilation: '-no-cpp-precomp' scons: *** [scitbx/math/boost_python/math_ext.o] Error 1 scons: building terminated because of errors. usr+sys time: 23.10 seconds wall clock time: 3 minutes 39.02 seconds (219.02 seconds total) -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom _______________________________________________ cctbxbb mailing list [email protected]mailto:[email protected]mailto:[email protected]> http://phenix-online.org/mailman/listinfo/cctbxbb -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom _______________________________________________ cctbxbb mailing list [email protected]mailto:[email protected] http://phenix-online.org/mailman/listinfo/cctbxbb -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom

Just a comment: we don't currently use the latest boost svn in the cctbx nightly builds, because it doesn't work on some older platforms. In your situation it may be a good idea to get boost from svn, or use the latest boost release. (I hope at some point we can drop the support for the old platforms and go back to working with the latest boost svn in the nightly builds.) Ralf On Thu, Feb 23, 2012 at 7:38 AM, Luc Bourhis wrote:

On 22 Feb 2012, at 09:56, [email protected] wrote:

X-code from app store last night...

With a more recent Boost revision, it compiles fine. I tried with the one I had, rev 76119.

HtH,

Luc

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