On 02/01/2011 04:20 AM, phenixbb-request(a)phenix-online.org wrote:
> Message: 11
> Date: Mon, 31 Jan 2011 16:37:14 -0800
> From: Nathaniel Echols<nechols(a)lbl.gov>
> To: PHENIX user mailing list<phenixbb(a)phenix-online.org>
> Subject: Re: [phenixbb] Phenix version 1.7-650 and coot
> Message-ID:
> <AANLkTim6ux3V6FcfhXr_0vhNf2P9GWXfBh3aexbZcZ41(a)mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> On Fri, Jan 28, 2011 at 8:00 AM, Leonid Flaks<flaks(a)bnl.gov> wrote:
>> > Hi!
>> > I just installed phenix version 1.7-650 on fedora 14 64-bit and noticed that
>> > if I start coot from within phenix interface, most of the icons on the right
>> > hand side of the coot window are not displayed.
>> > There is a lot of messages like this:
>> >
>> > Error loading icon: Couldn't recognize the image file format for file
>> > '/usr/share/coot/pixmaps/residue-info.png'
> Okay, apparently we missed an important environment variable in the
> script that launches Coot from Phenix - several library paths need to
> be cleansed to prevent conflicting with the libraries we distribute.
> The one we didn't know about (because it never caused problems before)
> appears to be XDG_DATA_DIRS. The crude fix for this is to edit
> $PHENIX/phenix/phenix/command_line/start_coot.sh and add this line at
> the end of a list of "unset" commands:
>
> unset XDG_DATA_DIRS
>
> It'll be fixed in the next build too. If this doesn't totally solve
> the problem, let me know - I'm going to unset several other paths too,
> but those didn't appear to have any effect on our Fedora 14 machine.
>
> -Nat
Nat, Just to confirm - your fix worked!
Thank you very much,
Leon
--
Leonid Flaks
Phone: (631) 344-2682
Fax : (631) 344-2741
