Dear PhenixBBers,
I call upon your wisdom because I recently tried to install Phenix 1.20
on a windows subsystem for linux distribution of Manjaro (Archlinux
based) and have failed with the following error :
==========================================================================
Phenix Installation
version: 1.20.1-4487
machine type: intel-linux-2.6-x86_64
OS version: 5.15.146.1-microsoft-standard-WSL2
destination: /home/my_machine/phenix-1.20.1-4487
# of processors: 20
=========================================================================
Configuring Phenix components...
Traceback (most recent call last):
File "./bin/install.py", line 268, in <module>
installer(sys.argv[1:]).install()
File
"/home/my_machine/phenix-installer-1.20.1-4487-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
line 200, in install
self.install_from_binary()
File
"/home/my_machine/phenix-installer-1.20.1-4487-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
line 349, in install_from_binary
self.reconfigure(log=log)
File
"/home/my_machine/phenix-installer-1.20.1-4487-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
line 431, in reconfigure
call(args=args, log=log, verbose=self.options.verbose)
File
"/home/my_machine/phenix-installer-1.20.1-4487-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/installer_utils.py",
line 55, in call
raise RuntimeError("Call to '%s' failed with exit code %d" % (args,
rc))
RuntimeError: Call to
'/home/my_machine/phenix-1.20.1-4487/conda_base/bin/python
/home/my_machine/phenix-1.20.1-4487/modules/cctbx_project/libtbx/configure.py
--current_working_directory /home/my_machine/phenix-1.20.1-4487/build
--command_version_suffix 1.20.1-4487 phenix phaser phasertng
solve_resolve labelit dials xia2 iota prime amber_adaptbx --use_conda'
failed with exit code 127
Trying to install Phenix 1.21 has produced the same error.
I have not managed to solve this, regardless of whether I was running
the installation command with sudo privileges or as root. For context, I
successfully installed Phenix 1.20 on the same machine and same
distribution 6 months ago, but had to reinstall everything since and it
does not work anymore now.
Have you heard of such an error? Do you have a hint on how to fix it?
Best regards,
Nicolas Caramello
PhD student
Structural Biology Group - ESRF
/Institut für Nanostruktur/- /und/ Festkörperphysik- Universität Hamburg
