Hi 
I am running the phenix.reduce with the -trim option and getting a segmentation fault with phenix version 1.6.289 
I will remove the molprobity introduced hydrogens using pdbtools ..but thought I will write in with this 

Thanks
Hari


$ phenix.reduce s3-3_2.1_refmac0-coot-15_refmac0FH.pdb -trim > s3-3_2.1_refmac0-coot-15_refmac0FnoH.pdb
reduce: version 3.15 11/6/2009, Copyright 1997-2009, J. Michael Word
Processing file: "s3-3_2.1_refmac0-coot-15_refmac0FH.pdb"
Segmentation fault