Hi Pavel,
I'm having trouble using your tool...Can you unpack

~terwill/fofomap.tgz

and try:

ls
coords.pdb native.mtz native.sca peak.mtz peak.sca
[ttmbpro:transfer/test/testit] terwill% phenix.fobs_minus_fobs_map peak.mtz native.mtz phase_source=coords.pdb

========================== phenix.fobs_minus_fobs_map =========================

Command line arguments: 
['peak.mtz', 'native.mtz', 'phase_source=coords.pdb']

Sorry: No PDB file found.


Also:

 phenix.fobs_minus_fobs_map peak.sca native.sca coords.pdb

========================== phenix.fobs_minus_fobs_map =========================

Command line arguments: 
['peak.sca', 'native.sca', 'coords.pdb']

*** Parameters:
f_obs_1_file_name = None
f_obs_1_label = None
f_obs_2_file_name = None
f_obs_2_label = None
high_resolution = None
low_resolution = None
sigma_cutoff = None
phase_source = None
scattering_table = *xray neutron

Sorry: No reflection data file found.


Thanks!
-Tom T



Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: [email protected]
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss




On Apr 30, 2009, at 11:39 AM, Pavel Afonine wrote:

fobs_minus_fobs_map