Hi Intekhab,

I'm glad the test works at least.  How about trying this:

Run just the job that hangs, but instead of running 100 models...just run
one single model.  Does that work?

All the best,
Tom

>> Hi Tom
>> i tried the commnad line and it works well. we also have increased the
>> memory to 3GB (earlier it was 2GB)
>> but still the system hangs with no response overnight.
>> the specifications of my system is as:
>> Ubuntu 9.04
>> GCC 4.2
>> RAM 3GB
>> Rosetta 3.2
>> Phenix 1.7.1
>> the command line test using
>> "phenix_regression.wizards.test_command_line_rosetta_quick_tests
>> test_rosetta_rebuild" works well .
>>
>> regards
>> intekhab alam
>> On Tue, Jul 19, 2011 at 11:31 PM, Thomas C. Terwilliger <
>> terwilliger@lanl.gov> wrote:
>>
>>> Hi Intekhab,
>>>
>>> I'm not sure about the part about the machine shutting down...but here
>>> is
>>> a little test you can run to make sure that rosetta and phenix are
>>> working
>>> properly together in rebuilding a model:
>>>
>>>  phenix_regression.wizards.test_command_line_rosetta_quick_tests
>>> test_rosetta_rebuild
>>>
>>> or a more complete set of tests:
>>>
>>>  phenix_regression.wizards.test_command_line_rosetta_quick_tests
>>>
>>> All the best,
>>> Tom T
>>>
>>>
>>>
>>> >> On 07/19/2011 04:49 PM, intekhab alam wrote:
>>> >>>
>>> >>> Hi
>>> >>> i tried to run rosetta on a unix machine (ubuntu 9.04) for my data.
>>> Upto
>>> >>> MR step everything goes fine , but during the rebuilding step after
>>> 20
>>> >>> cycles the computer shuts down.
>>> >>
>>> >> Interesting behavior for a Linux machine.
>>> >>
>>> >> Once the machine has rebooted, reading the output
>>> >> of the dmesg command and looking at events prior to the last boot
>>> >> may give you some information on why the computer hung.
>>> >>
>>> >> My guess is that you went out of memory while using mr_rosetta.
>>> >>
>>> >>> i have attached the log file for the autobuilding run of rosetta. i
>>> am
>>> >>> using phenix 1.7.1-743 version.
>>> >>> i will be grateful if some one helps me out
>>> >>> --
>>> >>> INTEKHAB ALAM
>>> >>> LABORATORY OF STRUCTURAL BIOINFORMATICS
>>> >>> KOREA UNIVERSITY, SEOUL
>>> >>>
>>> >>>
>>> >>>
>>> >>> _______________________________________________
>>> >>> phenixbb mailing list
>>> >>> phenixbb@phenix-online.org
>>> >>> http://phenix-online.org/mailman/listinfo/phenixbb
>>> >>
>>> >> _______________________________________________
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>>> >> phenixbb@phenix-online.org
>>> >> http://phenix-online.org/mailman/listinfo/phenixbb
>>> >>
>>>
>>> _______________________________________________
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>>> phenixbb@phenix-online.org
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>>>
>>
>>
>>
>> --
>> INTEKHAB ALAM
>> LABORATORY OF STRUCTURAL BIOINFORMATICS
>> KOREA UNIVERSITY, SEOUL
>>