Dear all,
I have an RNA/Protein big complex at low resolution (roughly 4A). I would like to have the base pairs in the RNA as close as possible to ideal base pairs.
I added restraints for distances between base pair hydrogen-bonding atoms but this is not enough to ensure that the bases will be in the same plane.
Could you suggest how to define for Phenix.refine this planarity ?
I am grateful for your advice,
Peter