Hi Sunandan,

If you make a dummy model that covers the region that you want to cut out then you can use map_box to cut out that part of the density.

All the best,
Tom T


On Tue, May 14, 2019 at 9:02 AM Sunandan Mukherjee <smukherjee@genesilico.pl> wrote:
Hi,

I want to build an RNA model using cryo-EM density. The structure is of
a protein-RNA complex and the map consists regions with protein
subunits. Is it possible to separate the portion of the map which
represents the RNA only?

Thanks and regards,

Sunandan

--
Sunandan Mukherjee (PhD)
Research Assistant
Laboratory of Bioinformatics and Protein Engineering
International Institute of Molecular and Cell Biology (IIMCB)
ul. Ks. Trojdena 4, 02-109 ​Warsaw, Poland

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--
Thomas C Terwilliger
Laboratory Fellow, Los Alamos National Laboratory
Senior Scientist, New Mexico Consortium
100 Entrada Dr, Los Alamos, NM 87544
Tel: 505-431-0010