Hi Crystal,
You can exclude any part of your model with a selection like this:
refinement {
refine {
strategy = *individual_sites *individual_sites_real_space rigid_body \
*individual_adp group_adp tls *occupancies group_anomalous
sites {
individual = "not chain B"
torsion_angles = None
rigid_body = None
}
}
}
In this example, I've excluded chain B from individual site
refinement. You can see more selection examples here:
http://www.phenix-online.org/documentation/refinement.htm#anch88
Thanks,
Jeff
On Thu, Dec 8, 2011 at 10:21 AM, Crystal VanderZanden
Does anybody know if there a general code that will allow us to exclude something from refinement? I would like to specify that there is a particular part of my structure that I don't want to refine the position. I've thought about deleting those atoms from the pdb file, but then that phasing information is excluded from the refinement. Any ideas?
Thanks, Crystal _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb