Hi all

I found that COOT is interchanging the traditional colors (green +ve and red -neg) to (green -ve and red +ve), but if read the map using PHENIX GUI, COOT behaves. May be I did some default option wrong in COOT. But even If open the fofc map , COOT interchanges the red for positive

density?

Sorry for the inconvenience.

From: r n <[email protected]>
To: "[email protected]" <[email protected]>
Sent: Wednesday, May 16, 2012 11:16 AM
Subject: [phenixbb] annealing omit map

Hi all

I have omitted some region manually from the pdb and did annealing - cartesian using phenix.refinment, the resulting map has density (1.2 sigma) in 2fofc and also

seen 2.8 sigma negative density on the omitted region?

any suggestions?

Rab

_______________________________________________
phenixbb mailing list
[email protected]
http://phenix-online.org/mailman/listinfo/phenixbb