On Mar 3, 2010, at 2:36 PM, hari jayaram wrote:
Is it likely that the phenix-coot integration with the new GUI requires a python infused coot ?. Although I have set the coot path correctly nothing happens after coot launches . I am using the ccp4 6.1.3 coot 0.6 (revision 2540) [with guile 1.8.3 embedded] and phenix 1.6.289 on OSX snow leopard 10.6.2.
I know the ccp4 coot does not come with python scripting support ...the pymol integration seems fine , but coot just sits there with an empty window after a phenix.validate run.
Sorry, without Python embedded there's nothing you can do. Don't bother with the Coot packages distributed by CCP4 - use the binaries on Bill Scott's web page, or install it with Fink. I think the GUI used to display a warning if the Coot build was incomplete, but I never got this to work properly. Unfortunately several other people have run into this same problem, so I'll see if I can restore the Python check. -Nat -------------------- Nathaniel Echols Lawrence Berkeley Lab 510-486-5136 [email protected]