Hi everyone,<br>While I am trying to deposit, I am faced with several things that I am not sure: FYI. I am in the &lt;Refinement Statistics&gt; section (Auto Dep Input Tool) in the PDB bank.<br>Most values are came from pdb file that was made from phenix.refine but it asks me &quot;R-factor (all)&quot; that satisfy the limits established by high &amp; low resolution cut off and &quot;number of unique reflections (all)&quot;.<br>
My simple question is if phenix has those kind of information, if so where I can find them.<br><br>Another question is if I changed water (deletion or changed occupancy) based on &#39;precheck&#39;, should I run phenix.refine again to get R/Rfree values in correct? I am not sure if these are captured by PDB automatically or not. (seemingly they do like that at this point but not 100% sure yet.)<br>
<br>With many thanks~<br><br>Young-Jin<br><br>