Re: [phenixbb] neutron refinement of protonated Glu and residues with alternate conformation

Hi Qun,

I found a few residues with two alternate conformations. After I generated alternation conformations, I used phenix.readyset to generate hydrogen and deuterium atoms for D/H atoms. However, phenix.readyset only gives H atoms for exchangable H atoms, such as the amide H atoms. The reason is that A and B letters have been assigned for the alternate conformation, not for the D/H atoms for particular conformations. Could anyone know how to solve this problem?

this is imitation of phenix.refine due to the fact that PDB file format does not allow longer than one-letter altloc id. Pavel