Hi Alex, this could be a problem with your .hhr-file. Recently, the secondary structure prediction is missing for certain models. The hhr-parser has been updated to handle this, so you may have to just update. If you are on the current version (dev-1080 or above), the problem is likely to be something else. In that case, could you send me the offending .hhr-file? BW, Gabor On Jun 21 2012, Alexander Batyuk wrote:
Dear all,
I'm trying to run phenix.mr_model_preparation in phenix 1.8-1069 with a .hhr file but it fails with
Reading homology search file: 4671015.hhr Sorry: Uninterpretable: 'Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhhchheEEE etc.
Could somebody point me to the right direction, please?
Thank you and best wishes,
Alex
-- ################################################## Dr Gabor Bunkoczi Cambridge Institute for Medical Research Wellcome Trust/MRC Building Addenbrooke's Hospital Hills Road Cambridge CB2 0XY ##################################################