It's very unlikely that phenix.refine ignores it. These options are very old and are used routinely by many users. Therefore questions:

- how you know that they are ignored?
- could you please send me the log file?

Note, that these weight optimizations start by default after certain number of macro-cycles, not immediately. There are several modes and you can use any you like. You can ask it to start from the first macro-cycle.

Pavel.

On 11/3/09 6:28 AM, Xuewu Zhang wrote:

Hi phenix developers/gurus,

I am using the latest night build of phenix on OS X snow leopard. I found that phenix ignores these lines in my custom refinement file:

refinement.target_weights.optimize_wxc="True"

refinement.target_weights.optimize_wxu="True"

Manually setting up the scale factors however works. I am not sure whether this is a bug or a platform related issue.

Thanks,

Xuewu Zhang
_______________________________________________
phenixbb mailing list
[email protected]
http://www.phenix-online.org/mailman/listinfo/phenixbb
  