4 Jan
2010
4 Jan
'10
4:56 p.m.
Is it any tools in the phenix that could optimize the secondary structures alone in the pdb?
We don't have direct support for secondary structure restraints (although this came up quite often already). Using external tools you could prepare a file with "custom bond" restraints as described in the phenix.refine documentation. Note that the "slack" parameter is meant for hydrogen bond restraints, which I assume you want to use. Ralf