Re:
<quote>
Message: 8
Date: Thu, 21 Feb 2008 14:23:24 -0500
From: "Mary Fitzgerald"
Subject: [phenixbb] Phenix.refine Questions
To: "PHENIX user mailing list"
Message-ID:
<[email protected]>
Content-Type: text/plain; charset="iso-8859-1"
First, I have a hopefully easy question. I can't seem to figure it out
although feel like I should be able to. Is there a way to run a
phenix.refine job in the background? I tried using the & like I usually
do and it didn't work. It would be nice to start a job and go home
without leaving myself logged into the computer. I didn't see anything
in the documentation which makes me think I'm being dull.
</quote>
Apologies if someone has already answered this but you can set up a
little command file e.g. 'refine.com', something along the lines of:
phenix.refine model_from_coot.pdb data.mtz ligand.cif
my_favourite.params --quiet
With all your parameters in 'my_favourite.params' and run it with
nohup ./refine.com &
You can then log off and check it later and it will still be running.
The key seems to be the nohup and the '--quiet' switch.
Works for me, hope it works for you.
Cheers,
Eddie
Edward Snell Ph.D.
Assistant Prof. Department of Structural Biology, SUNY Buffalo,
Hauptman-Woodward Medical Research Institute
700 Ellicott Street, Buffalo, NY 14203-1102
Phone: (716) 898 8631 Fax: (716) 898 8660
Email: [email protected] Telepathy: 42.2 GHz
Heisenberg was probably here!
