But the 2Fo map around the ligand without omit is well defined.
Phenix defines a very big box around the target pdb-includes surrounding protein residues. Is there a way to control this?

The omit map of the water molecule in the binding site is also poor.

Thanks

On Fri, Jun 3, 2011 at 10:37 AM, Ed Pozharski <epozh001@umaryland.edu> wrote:
On Fri, 2011-06-03 at 10:21 -0400, Desi Mail wrote:
> But the 2Fo density around the ligand is very poor.
>

perhaps your ligand is disordered

--
"Hurry up before we all come back to our senses!"
                          Julian, King of Lemurs

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