I see. I suggest to run two refinements:

- with NCS and "optimize_wxc=true optimize_wxu=true" options, and

- without NCS and with "optimize_wxc=true optimize_wxu=true".

This will make it weight-choice independent and so easier to understand. Otherwise, since NCS term is included in weights calculation, using or not using NCS may change the X-ray/Restrains weight which may have larger effects than using/not using NCS itself.

Pavel.


On 5/4/09 6:48 PM, Maia Cherney wrote:
Hi Pavel,
The resolution is 2.15 A. The NCS was always on during the refinement 
until we got low R factors (19.2% and 21.2%). Then the NCS was turned 
off for the final refinement and the R factors increased, which is 
strange as they should be going down when you apply less restraints. 
There are five restraint groups in the asym. unit.

Maia



Pavel Afonine wrote:
  
Hi Maia,

- I'm wondering why this puzzles you?

- The gap Rfree-Rwork seems suspiciously small, although I can't tell 
without knowing the resolution.

- Overall, better R-factors (Rwork, Rfree and Rfree-Rwork) mean that 
among many possible refinement strategies you have chosen the one that 
is better than the others.

What is the resolution?
What are the R-factor  before using NCS?
What will be the R-factors after you turn NCS back off?

Pavel.


On 5/4/09 12:27 PM, Maia Cherney wrote:
  
    
Hi everybody,
I am wondering why my final structure refined with NCS=True has lower  R 
factors (19.2% and 21.2%) than without NCS by approximately 1.5%.

Leo
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