[phenixbb] Re: Problem when trying to install last nighlty build on Ubuntu 22.04

Hi Emmanuel, How large are the downloaded files? They should be around 2.8 GB or 5.6 GB for the CUDA version. How fast is the download? -- Billy K. Poon Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 91R0183 Berkeley, CA 94720 Fax: (510) 486-5909 Web: https://phenix-online.org On Thu, Oct 16, 2025 at 3:32 AM Emmanuel BETTLER < [email protected]> wrote:

Hi Billy, thank you for your reply. The checksum is indeed incorrect. But when I try to download the binary again, it still has the same checksum on my computer! I tried versions 5824 and 5848, with and without CUDA, and all versions return the same error on different packages. I don't know what to think! I'm open to any suggestions.

Emmanuel

Le 06/10/2025 à 19:21, Billy Poon a écrit :

Hi Emmanuel,

Can you verify the checksum of the installer? It looks like the file may be corrupted and could not be extracted correctly. The SHA256 checksum is

60fde2a0fc7c42cecdc2d0ae5e68079aa02908d22fac280486ea5463d4d71a15 Phenix-2.0-5824-Linux-x86_64.sh https://MailInBlack.univ-lyon1.fr/securelink/?url=http://Phenix-2.0-5824-Linux-x86_64.sh&key=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

If the checksum does not match, please re-download the file.

-- Billy K. Poon Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 33R0345 Berkeley, CA 94720 Fax: (510) 486-5909 Web: https://phenix-online.org https://MailInBlack.univ-lyon1.fr/securelink/?url=https://phenix-online.org&key=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

On Thu, Oct 2, 2025 at 5:33 AM wrote:

...

Hi, on a linux ubuntu 22.04 distribution, when i'm trying to install latest Phenix nightly version 2.0-5824, i have the following error message:

[...] PREFIX=/home/ebettler/Soft/phenix-2.0-5824 Unpacking bootstrapper... Unpacking payload... entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. concurrent.futures.process._RemoteTraceback: ''' Traceback (most recent call last): File "concurrent/futures/process.py", line 432, in wait_result_broken_or_wakeup File "multiprocessing/connection.py", line 251, in recv TypeError: InvalidArchiveError.__init__() missing 1 required positional argument: 'msg' '''

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "entry_point.py", line 244, in _constructor_extract_conda_pkgs File "concurrent/futures/_base.py", line 449, in result File "concurrent/futures/_base.py", line 401, in __get_result concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending.

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "entry_point.py", line 691, in <module> File "entry_point.py", line 681, in main File "entry_point.py", line 582, in _constructor_subcommand File "entry_point.py", line 246, in _constructor_extract_conda_pkgs RuntimeError: Failed to extract /home/ebettler/Soft/phenix-2.0-5824/pkgs/chem_data-2.0.5824-pyhe0d8492_0.conda: A process in the process pool was terminated abruptly while the future was running or pending. [PYI-197168:ERROR] Failed to execute script 'entry_point' due to unhandled exception!

What's wrong ? Any advice are welcome ! _______________________________________________ phenixbb mailing list -- [email protected] To unsubscribe send an email to [email protected] Unsubscribe: phenixbb-leave@%(host_name)s